G262194


Basic Information

Item Value
gene id G262194
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1139352 ~ 1145007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297615
TCAAAAATGAAAAATAGTATTTATTTTCTCATTGTCCTTTCCCAAAAACGGGATCAAAGATTTTACAGAAACCAACATTCATATCTACAATGCGAAAGACCGTGTGGCATTGACAGTCATTGTGAACGAAGTGCAGCATGGGAGTGGACAGTCAGAATTGTGTATAAAAATCAGCCACCGAGATAAAAAAGTGGAGATCTCAGGCTACGATACTGGTTGTCAGCAAAAGTTGTTGGTCAGGTGCCATTTATGCCTTGACCAAGACGGCAAACTCTGTAAAATTAAGGAGAAACAATGAATCAGAAGACATTGTAGAGTGGCTGGAATTATATGTTAGCAATTATGGATTTATAAATAAGCAAATTCCTCACCATCAACTCCAATCTTGCCATCACCATCAGAGTCTCCAGCTTTCAAGAAGGCCTTTGTCTCTGCATCAGTGAGTGCCCTGGCACCAGCAGAGAAGTTCTGCAGGAACAGCTTGAGCTCTTCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCAATGACAGCAAAGGCCTTCTTGATGTCATCAGAACTCTTGGCGGTCAGGCCAACCTTGGCGAAGAAGTCCTTGTACTTGAAGGAGTCAGCAGCTGGAAGGTAATTTCATCAGGTGTTTAGCATGATGGTGGACATAAATGGTAGAAGGACTAAGAAGAACATTTGATTTAAGGGTCTTGAAAAACACAACAAGCTCTAACAAATGCTGTTTTCACTGATATTTCCATTAAATGAAAATTCTGTCATCATTTACTCACCCTCATGTTGTTCCAAATCCACACAACTTTCTTCCGTGGAGCACAGAAGGAGATGTTAGGCAGAATGACAGTCTCAGTCACCACTCACTTTCAATGCTTCTTTGTCCATACATGAAAGTGAATAGTGACTGAGACTGTCAGTCCCTAACATTCTGCTTTTTGTTCCACGCAAAAAAGAAAGTCAAGTGGGTTTGGAACGACATGAAATTGATGTTCTCGCTTTAGGTTGTAGGTCAATGGGACGGTCCAGAAACATGCAGGTTACCTTGGCAGGCCTGCAGGGCTGCAGTGATGTCAGCCTCATTCAGAATACCAGCGAATGCCATGATTAGCCTCTGGTTGTCTTTAGGGTTTAGGTTTGGATTCGCAAGGATGAAATTGGCTACTGCAGTGAGCACCAACTCCGTGGCTTCCACCTTATATACCACTACTCAACCGAAATATAAGGCATAATGTAATGGA
>TU297619
TCAAAAATGAAAAATAGTATTTATTTTCTCATTGTCCTTTCCCAAAAACGGGATCAAAGATTTTACAGAAACCAACATTCATATCTACAATGCGAAAGACCGTGTGGCATTGACAGTCATTGTGAACGAAGTGCAGCATGGGAGTGGACAGTCAGAATTGTGTATAAAAATCAGCCACCGAGATAAAAAAGTGGAGATCTCAGGCTACGATACTGGTTGTCAGCAAAAGTTGTTGGTCAGGTGCCATTTATGCCTTGACCAAGACGGCAAACTCTGTAAAATTAAGGAGAAACAATGAATCAGAAGACATTGTAGAGTGGCTGGAATTATATGTTAGCAATTATGGATTTATAAATAAGCAAATTCCTCACCATCAACTCCAATCTTGCCATCACCATCAGAGTCTCCAGCTTTCAAGAAGGCCTTTGTCTCTGCATCAGTGAGTGCCCTGGCACCAGCAGAGAAGTTCTGCAGGAACAGCCTGAAGAGCACAAGCAAACAATCAACCTCAAGAATTGTTCCAGGGTTTGAACCAGTAAAAAGTGATTTAAGACCAGACTTACTTGAGCTCTTCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCAATGACAGCAAAGGCCTTCTTGATGTCATCAGAACTCTTGGCGGTCAGGCCAACCTTGGCGAAGAAGTCCTTGTACTTGAAGGAGTCAGCAGCTTGGCAGGCCTGCAGGGCTGCAGTGATGTCAGCCTCATTCAGAATACCAGCGAATGCCATGATTAGCCCAGTTCTGGCGTAATCAAACCGCTTAATAAAGAGCGACATCCAAACACGTCCAAACTCCAAGACACAAATTATTCCCACTCCAGGTGGCCAAGAATTAATACGTCAAACCATCCTCTCCGGACCAGCCCGAAGTCGTATGGCCGTTGTTGCTCGAAGTTTTTCTTTCTTCGTTGCAAGATACTGTAAGCTGAGCTCGTGTAGTTTCATCTGTGAAGACACTCACCTCTGGTTGTCTTTAGGGTTTAGGTTTGGATTCGCAAGGATGAAATTGGCTACTGCAGTGAGCACCAACTCCGTGGCTTCCACCTTATATACCACTACTCAACCGAAATATAAGGCATAATGTAATGGA
>TU297620
TCAAAAATGAAAAATAGTATTTATTTTCTCATTGTCCTTTCCCAAAAACGGGATCAAAGATTTTACAGAAACCAACATTCATATCTACAATGCGAAAGACCGTGTGGCATTGACAGTCATTGTGAACGAAGTGCAGCATGGGAGTGGACAGTCAGAATTGTGTATAAAAATCAGCCACCGAGATAAAAAAGTGGAGATCTCAGGCTACGATACTGGTTGTCAGCAAAAGTTGTTGGTCAGGTGCCATTTATGCCTTGACCAAGACGGCAAACCATCAACTCCAATCTTGCCATCACCATCAGAGTCTCCAGCTTTCAAGAAGGCCTTTGTCTCTGCATCAGTGAGTGCCCTGGCACCAGCAGAGAAGTTCTGCAGGAACAGCCTGAAGAGCACAAGCAAACAATCAACCTCAAGAATTGTTCCAGGGTTTGAACCAGTAAAAAGTGATTTAAGACCAGACTTACTTGAGCTCTTCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCAATGACAGCAAAGGCCTTCTTGATGTCATCAGAACTCTTGGCGGTCAGGCCAACCTTGGCGAAGAAGTCCTTGTACTTGAAGGAGTCAGCAGCTTGGCAGGCCTGCAGGGCTGCAGTGATGTCAGCCTCATTCAGAATACCAGCGAATGCCATGATTAGCCTAAAAAATGGCAGAGGGTTTCATTTTAATTGGATATATACATAAATTTGAAGTTATACATAAATAAATAGCCTATACATCATTTTAATTTAATTCAATAAAACTATGTCATTTCAGCTTTATAATACTCCAGACACACAGATCATCAGAAATGATTTGCTTCCATATGCTTGGTAAATATTTAACAGCAGTCATATTAATTGCATATGTCTTTAACAACAGAGTGTGTTATGATAAATCCCACCCAGTTCTGGCGTAATCAAACCGCTTAATAAAGAGCGACATCCAAACACGTCCAAACTCCAAGACACAAATTATTCCCACTCCAGGTGGCCAAGAATTAATACGTCAAACCATCCTCTCCGGACCAGCCCGAAGTCGTATGGCCGTTGTTGCTCGAAGTTTTTCTTTCTTCGTTGCAAGATACTGTAAGCTGAGCTCGTGTAGTTTCATCTGTGAAGACACTCACCTCTGGTTGTCTTTAGGGTTTAGGTTTGGATTCGCAAGGATGAAATTGGCTACTGCAGTGAGCACCAACTCCGTGGCTTCCACCTTATATACCACTACTCAACCGAAATATAAGGCATAATGTAATGGA
>TU297616
ATTGTTTTAAATCGAATGTGTTTTTATTTCCTTAAAGTGCAAAAGAGGTTGTAAGTTTGCACACAGAAGGTTTTTTACAGAACAATACAATGCAATGAAACAACATTAATAATAAATAGCTTTTCAAGACATTGAGCGTGCGTTCTTTGCAAGGAGGAGTTTGCAGGGCATTCATAAATAAATATAAAAAAGATGATAGGTAAGCAGAGCTCTGGTTCCAAAGACAAGGGTCCATGAATGCTTAGGCCTTTACAAGCAAAGCAAACTCATCAACGCCGATTTTGCCGTCACCATCGCTGTCACCAGCTGAGAGGAAGGCCTTGGTCTCAGCATCAGTCAATGCCCTGGCGTCAGCAGAGAAGGTCTGCAGGAACAGTTTCAGCTCATCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCGATGACGTAGAAGGCCTTCTTGATGTCGTCGGGAGTCTTTGCGCTCAGGCCGACCTTGGCGAAGAAGGTCTTGTAGTTGAAGGAGTCAGCAGCAGCGCATTCCTTAAGGGCTGCAGCCACATCTTCGTCCTTGAGAATTCCTGCAAATGCCATTTTGATTTATCTTTGCGCTGCGCTGGCAACTGTTCCACAGATGTGCGACGACTACCCAAAGCACCCATGGGTCCGGCTTTTATACTTTTGTCTCTGGGGTTGTAACGGACACCATTTGCT
>TU297621
AATTATGAATATGAGATTAAGTACCATCAACGCCGATTTTGCCGTCACCATCGCTGTCACCAGCTGAGAGGAAGGCCTTGGTCTCAGCATCAGTCAATGCCCTGGCGTCAGCAGAGAAGGTCTGCAGGAACAGTTCAGCTCATCCTCCTCAATGAAGCCGCTCTTGTCCTGGTCGATGACGTAGAAGGCCTTCTTGATGTCGTCGGGAGTCTTTGCGCTCAGGCCGACCTTGGCGAAGAAGGTCTTGTAGTTGAAGGAGTCAGCAGCTGGAATTACACAAGAAAATACATTAAAATCAATGAATTAATCAACAGTCTATTGTTACTCTGTGGAGAGTGTTTTTCAGTCTATTGTTTTCCTATAGCAGAGGTGTCTTACCAGCGCATTCCTTAAGGGCTGCAGCCACATCTTCGTCCTTGAGAATTCCTGCAAATGCCATTTTGATTTATCTGGAAAAAAACCCACATAAGATGATGATACATTAAGATGCTTAAACGTTTTGACATTCAATTTGGAAAAAAATGGAACATTTAGTGTAAATAATTAATAATTCCTTGCAAAGCAGACATGAAGCTGTTCCACCAAACACAAATTAACTGTCAATTCTCCAATTACAGTTAAACTTGCTCCTACAGTCAAAATATGATCTCTGTGAGATCATGCGAGAATGCCAGCCTAACGAAAAACCGAATCATTAAAAAAATGGATCACTGCAAGCTCATCCAACATCTCAGAAAGTAGCAGGTCCTTGGTTTGGTTAAATGAAGAGATTGGTGTATTATCGCGTTTTCAGTCCTGCTGCAAGTCCGTTTACATCCTCATTTTGTTCCTCCATTTTTCGTTATCATATTCCATGGTGATTAGAGAAATTCACCGAGCCCTGGTGTATGATCCTCATGGTCTATCCGGTAAACTCACCTTTGCGCTGCGCTGGCAACTGTTCCACAGATGTGCGACGACTACCCAAAGCACCCATGGGTCCGGCTTTTATACTTTTGTCTCTGGGGTTGTAACGGACACCATTTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297615 False 1241 lncRNA 0.43 3 1139352 1141143
TU297619 False 1118 lncRNA 0.44 3 1139352 1141143
TU297620 False 1263 lncRNA 0.42 3 1139352 1141143
TU297616 False 691 lncRNA 0.46 5 1143181 1145007
TU297621 True 1028 TUCP 0.43 2 1143871 1145007

Neighbor

gene id symbol gene type direction distance location
CI01000063_01095386_01102295 NA coding upstream 37057 1095386 ~ 1102295 (+)
CI01000063_01089059_01094639 PMS2 coding upstream 44330 1089059 ~ 1095022 (+)
CI01000063_01047868_01059684 CYTH3, CYTH3A coding upstream 79627 1047868 ~ 1059725 (+)
CI01000063_01008945_01013177 ATAD1, ATAD1B coding upstream 125803 1008945 ~ 1013549 (+)
CI01000063_00889956_00941586 RNLS coding upstream 197612 889956 ~ 941740 (+)
CI01000063_01168018_01168572 BHLHA15 coding downstream 20775 1165782 ~ 1169391 (+)
CI01000063_01219046_01224170 NA coding downstream 73893 1218900 ~ 1225323 (+)
CI01000063_01240976_01328455 TRRAP coding downstream 94375 1239382 ~ 1328688 (+)
CI01000063_01384163_01441190 FAM20CB, FAM20C coding downstream 238191 1383198 ~ 1441349 (+)
CI01000063_01456382_01458080 NA coding downstream 311084 1456091 ~ 1459374 (+)
G262191 NA non-coding upstream 3834 1132990 ~ 1135518 (+)
G262189 NA non-coding upstream 19476 1118933 ~ 1119876 (+)
G262185 NA non-coding upstream 37998 1101147 ~ 1101354 (+)
G262174 NA non-coding upstream 161338 977802 ~ 978014 (+)
G262169 NA non-coding upstream 164742 974080 ~ 974610 (+)
G262211 NA non-coding downstream 51361 1196368 ~ 1198837 (+)
G262266 NA non-coding downstream 364272 1509279 ~ 1509628 (+)
CI01000063_01533946_01534527 MSRB1B non-coding downstream 388846 1533853 ~ 1535375 (+)
G262101 NA non-coding downstream 510195 1655202 ~ 1656049 (+)
G262104 NA non-coding downstream 537212 1682219 ~ 1686364 (+)
G262060 NA other upstream 428798 710110 ~ 710554 (+)
G261984 NA other upstream 471970 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 581018 533801 ~ 558334 (+)
G261700 NA other upstream 864902 252412 ~ 274450 (+)
G262423 NA other downstream 1096401 2241408 ~ 2242965 (+)
G262436 NA other downstream 1568608 2713615 ~ 2714517 (+)
G265391 NA other downstream 4768776 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 5190271 6335618 ~ 6338283 (+)

Expression


Co-expression Network