G263119


Basic Information

Item Value
gene id G263119
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1500835 ~ 1504950 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298672
GCTGAGAATGTCTGTTTTTATTTTTCATATAAGGAAATGCCACTTCCTACAAAGAAATCTCTGGCACTCCTTGAGTTAATGTTTAAAGTTTATTATCGGTAGCTGACTACCATCTTATGGTCATAATTACACAGGTGAACTTTCAGAAACAGAAACTCAATGCTCTGATGGTGATATTACCATATTACCATAATTAGACTTGCAGTATAAAGCCAAAGAACATAATAACAATAAGTGGAATAATTTAGTTTGTTTTACTCGTTAAGTTTCATACACAAAGAACACTACACTACACAACAGTTTCTGCAGAGATCAGTTTTTTATGATCTGGAAATGTTTCCTATATTAATTGTATATGTATATAATGCTTTATGTGTGCATGATGCAATATGTCTGTATAAATTACCACATCCAATGAAGACAAAAAAATCCCATGCCATCATGACATCAGACTCATTAAAATGCAGTCAAAACATTTATTGAAACGTATGCAGGTATATAAGCAAAAGTCCAGATAAAAAACTTTTTCCAGTATGGAATACCATTAACTCCAAGACAAAAATATAACAGTCTGAATATAATGTTAATGAAAAAATAAAACTGTGAAAACAATCCTTTAAATATGTACAATGTAACTACCTTCAACCGGTTATTACATTTCATTTGAGAAAGAAAGATATATACATATATATATATACAATATAGCCCCCCCCAAAAATTATATATATATATATATATATATATATAGCCCCAAAAAGGATTACAAGAGATTATAATGAGCACAGATTAAAATTGTATTATCTTATACTCAAACATTAGTCACAATTCGTGCAGAGGTTGCCAGAGCAGCTTTACGGGTGTAGGTCGTGCAGCGACGTAGAATCTCTTGAGTTTGTGGTCGGGGTGGTACCCTGGGAGCTTCAACTCCTTTCATAGGGTGGCCAGTATCTGAGCTGGTGGGGCTGGACTGGCCACTAGACATATCACTATCAATGCTGTCTGGCTCTTTATCCTGCTGTCTCAGGCCCTCATCCCCCTCTGAGCTGGACATGCTTGGGCTCATAGAGGTGGTGTCCGAGGAACTGAAGCTGAAGTCAGTTCCATCATCGCTGAAGCTGCCAGACTCCTCATGCTGTACTGGATAGGTGTTCTGGCTCTGGGGCTCTGACAGTATTTCCAGAGAGTTGGAGTTAAGGAAACTATTCATTCTGTTTTGTGAGTGGACCTGAGGCTCCAGTTTGAAAGAGTTGCTGGTGGACAGGTTGATAGTGGAGCTGTGAAGTTTCTTCTGAAGAGTCTGAAGGCCAAAGCTGGGGCTGCTGTAGAGCTTCAGGTACATGGAGGGCACATAGCCTGCCTTTCTGTTATATCTGCACAGGGAATACAAGCTTAAGGTTAAGTTTTGTGGGGCAGACACATCATGTACATTTAGAAATAATCATTTTGTAATTACATATTAGTTTCTCTTTCTATCTATCTATGTTAGTTTCTATATACACTACTATGCAAAACTCAACATACTGGATTGATTTCTGAAGGATCATGTGAGAATGAAGAAATGGCTGCTGAAAATGCAGTTTTGCCACCACAGAAATAAATTATATTTTAAAATATATTAAAAGAGAAAACAGTTTTCAAATTATAATATTTCACATTTATTTATTACTGTTTTTTACTGTATTTTTAAAAACAAAAATGGCCGACTGACTGTATATTATCTTTATTGCAAGGCTATTTGTAAGTAATAAGGTACGAGAGGCTGTGCTGTATCGTGAATAAGTCACGGCTGAAGGGCGTTGTTAGGCACGACGCGAAGCAGAGTGCCTGCAACCCCTTCAGCCGTGACTTATTCATGATACAGCACCAGCCTCAAGTACCTTATTGCTTTTATAAAACGCCATTACGCCATTAGATGGCGGTAAAGACTGTCTTTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGACACAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATTAGACATTTAAACAGATTTTTTTTATTATGAACAGGACTGACCTGAAGGAAACTGCTAAATCTGAATGCAGATAATAAACTCGCTCAATCGATCTCTTTCTCACAATACTCTTCTACATAATACAGTAAGCTTCAATTGAGAACAAACAGTTTACGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACACAGAACCGTTGGGTGAAGCGGTCATTGCCGTGTTTTATCGTGAATAAGACACAGCTATTGACCAATCAGAATCAAGGACAGGAACTAACCGTTTTATAAGAAATCTATATGAAATATAGATTTGAGTTTACATTATTTTATGATGTAATAAGTAAACAAAAGACATGTAACTACACCCTAAAAAATGCTGGAGCAGAGCTATGTAGGAAATAGGTTGCTAGGGCAAGTCAGTTATATAGTTTAGCAGCCATTACATAATATGCGGTCTGTCTTCCACATACCTCTGGTCTATTGATACATGCGTCTTAAAATAATTCCTTTCATTCTTTGAATGTCAGTGCAATCTGAGAAAACAACTGTAATTACCTAACAAGCCACCAGCCATTATCAGACCTCTGTAACACCTCCACAACAGCGCCAATGCTCAGAGAGAGCTCGTCCTCTTTTTTAGATGTGTAACTTCTTGCAGCGCAGTACAGAGACACTAGGGGAGCGATGGAAAAAAGTTCAGTTAGCAAGGTTATCTTTGGAGATTCAGCACGACAGAACGTTTATGTAACAACAGTATCCTACTTTCAAATGTAGGTGAGTCAGACTCATCCTCGTCCTCTTCTTCTTCCTCATCACATAACTCCAAGTAGGGAGCGGGAAACCAAGCTAGACGTTTATCCTCATTCTCGACAAGCCACCAACCTGATCACAACAACGCCCACAGAAAAACATCAAGAACCTGTAAGGAACTGCACTCTGAACTCTCAGTTCACTCTGTTATGGGAGAAGATACAGTACATACCTGCTTTGTCTTTGATGAGCACATCCAGTCTTTCATCCACAGCTACTTTAAAGGGCTTGTTCTTTGTATCTTTGGTCTCATATGGAGCCACACATCGATATGCCTTGGACACAAAAGGCTGGGTCACATTGCCATTGCTCAGATGTTTATTTGCCAAGTCAGGTCCTCCGTTGACAGTTGGGATGCTGTTTGATTGCAGAATCATCACACTGCAGGGAGAAAAGAGCAGCTTTAACAGACATTAACTGCACAAACACTTTCCAGCAGGTTGACTCGGGTATTAAACTGTGTCAACGGAAACAGATCAAATCAGAAATATAAAGTGAGCTACCGTACATAGTGGACATATTTTTGGAATGTTGCAGTTACCTGCTTATTTGCCTCAGGGAAATAATCTACATGACCTACCTGTTTTGGGTATATTCTGGCAGAAGCTCCTGCTCAGTAGGCAGAAAGAACTGAATGACTTCTGTGGAATGTGACACAGCCGTGTCACACTGCAATAGGTTGGAACAGTACTTCTCCAGATTCCTCAGACGAGACACTGACTTAGCCAGACCCTTCAACTGAAACGACGTCGTCAAGAAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU298672 True 3658 lncRNA 0.39 2 1500835 1504950

Neighbor

gene id symbol gene type direction distance location
CI01000063_01483554_01486900 ATPAF2 coding downstream 13935 1483288 ~ 1486900 (-)
CI01000063_01473401_01482295 NA coding downstream 18540 1473401 ~ 1482295 (-)
CI01000063_01329725_01330246 NA coding downstream 170589 1329711 ~ 1330272 (-)
CI01000063_01228002_01232509 NPTX2B, NPTX2 coding downstream 267842 1226473 ~ 1232993 (-)
CI01000063_01216041_01217287 NA coding downstream 283272 1215715 ~ 1217563 (-)
CI01000063_01510130_01526860 NA coding upstream 5120 1510070 ~ 1527772 (-)
CI01000063_01541176_01541412 NA coding upstream 36136 1541086 ~ 1542571 (-)
CI01000063_01548731_01553329 BRICD5 coding upstream 43497 1548447 ~ 1553329 (-)
CI01000063_01554604_01555607 PGP coding upstream 49030 1553980 ~ 1555607 (-)
CI01000063_01557732_01560541 ZDHHC4 coding upstream 52703 1557653 ~ 1560541 (-)
G263081 NA non-coding downstream 126972 1373466 ~ 1373863 (-)
G263071 NA non-coding downstream 164020 1336594 ~ 1336815 (-)
G263021 NA non-coding downstream 171395 1310741 ~ 1329440 (-)
G263029 NA non-coding downstream 219059 1281027 ~ 1281776 (-)
G263132 NA non-coding upstream 4358 1509308 ~ 1509573 (-)
G263178 NA non-coding upstream 30813 1535763 ~ 1536121 (-)
G263180 NA non-coding upstream 35003 1539953 ~ 1540199 (-)
G263135 NA non-coding upstream 35535 1540485 ~ 1540792 (-)
G263182 NA non-coding upstream 58100 1563050 ~ 1563521 (-)
CI01000063_01669384_01670016 HBAE1 other upstream 164461 1669317 ~ 1672019 (-)
CI01000063_02177769_02178239 NA other upstream 671489 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 820162 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1220809 2725759 ~ 2726535 (-)
G265567 NA other upstream 3657544 5183279 ~ 5183287 (-)

Expression


Co-expression Network