Gene
RNA
| Item | Value |
|---|---|
| gene id | G263180 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 1539953 ~ 1540199 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU298742 | True | 247 | lncRNA | 0.45 | 1 | 1539953 | 1540199 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000063_01510130_01526860 | NA | coding | downstream | 12181 | 1510070 ~ 1527772 (-) |
| CI01000063_01483554_01486900 | ATPAF2 | coding | downstream | 53053 | 1483288 ~ 1486900 (-) |
| CI01000063_01473401_01482295 | NA | coding | downstream | 57658 | 1473401 ~ 1482295 (-) |
| CI01000063_01329725_01330246 | NA | coding | downstream | 209707 | 1329711 ~ 1330272 (-) |
| CI01000063_01228002_01232509 | NPTX2B, NPTX2 | coding | downstream | 306960 | 1226473 ~ 1232993 (-) |
| CI01000063_01541176_01541412 | NA | coding | upstream | 887 | 1541086 ~ 1542571 (-) |
| CI01000063_01548731_01553329 | BRICD5 | coding | upstream | 8248 | 1548447 ~ 1553329 (-) |
| CI01000063_01554604_01555607 | PGP | coding | upstream | 13781 | 1553980 ~ 1555607 (-) |
| CI01000063_01557732_01560541 | ZDHHC4 | coding | upstream | 17454 | 1557653 ~ 1560541 (-) |
| CI01000063_01603848_01622589 | NA | coding | upstream | 63275 | 1603474 ~ 1622786 (-) |
| G263178 | NA | non-coding | downstream | 3832 | 1535763 ~ 1536121 (-) |
| G263132 | NA | non-coding | downstream | 30380 | 1509308 ~ 1509573 (-) |
| G263119 | NA | non-coding | downstream | 35003 | 1500835 ~ 1504950 (-) |
| G263081 | NA | non-coding | downstream | 166090 | 1373466 ~ 1373863 (-) |
| G263071 | NA | non-coding | downstream | 203138 | 1336594 ~ 1336815 (-) |
| G263135 | NA | non-coding | upstream | 286 | 1540485 ~ 1540792 (-) |
| G263182 | NA | non-coding | upstream | 22851 | 1563050 ~ 1563521 (-) |
| G263183 | NA | non-coding | upstream | 23604 | 1563803 ~ 1566540 (-) |
| G263127 | NA | non-coding | upstream | 50502 | 1590701 ~ 1593377 (-) |
| G263131 | NA | non-coding | upstream | 89628 | 1629827 ~ 1632556 (-) |
| CI01000063_01669384_01670016 | HBAE1 | other | upstream | 129212 | 1669317 ~ 1672019 (-) |
| CI01000063_02177769_02178239 | NA | other | upstream | 636240 | 2177747 ~ 2178395 (-) |
| CI01000063_02326799_02327290 | CBY1 | other | upstream | 784913 | 2326741 ~ 2327309 (-) |
| CI01000063_02725759_02726399 | NA | other | upstream | 1185560 | 2725759 ~ 2726535 (-) |
| G265567 | NA | other | upstream | 3622295 | 5183279 ~ 5183287 (-) |
