G263182


Basic Information

Item Value
gene id G263182
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1563050 ~ 1563521 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298744
TTGATAGAAGGTCATTCATCAAAGCATTAGCCTACATGCACATCTAAATGTGCTGCTGAAGAAAGTAATGTTAATATTAATACAACATTATCTCTCTAATACAAAATTTTTGAACACTAAACACTTACTAATATCTTTGGGCGGATAACGAGGACCCGGCTTGTTCTGCCGTAAGGAGTATCTCCCTTTCTTATTCTGGAGGAATTTCTTCATTTTGTCGTAATTCAACAGGTATCAAAGATTCTAAGGGGAAAACGCCTGGTCCACAGCTTCAACGTTGTCGCCGAGATCCTCCTACTGCACAGCACCACGCTTCAGGGGAGACGCCTTGCGAATGCCCCCCATCGTCATGTGGCATGCAGAGCACTGCCACTTAAAAAAAGGGTGACACTGCATCAAGTGCCAGAGTGATCCTGTCTATGAGTTGACTCTGCATCTCTGGCGAGTCTTTCTAGTCCTGCCTGCAGAGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU298744 True 472 lncRNA 0.45 1 1563050 1563521

Neighbor

gene id symbol gene type direction distance location
CI01000063_01557732_01560541 ZDHHC4 coding downstream 2509 1557653 ~ 1560541 (-)
CI01000063_01554604_01555607 PGP coding downstream 7443 1553980 ~ 1555607 (-)
CI01000063_01548731_01553329 BRICD5 coding downstream 9721 1548447 ~ 1553329 (-)
CI01000063_01541176_01541412 NA coding downstream 20479 1541086 ~ 1542571 (-)
CI01000063_01510130_01526860 NA coding downstream 35278 1510070 ~ 1527772 (-)
CI01000063_01603848_01622589 NA coding upstream 39953 1603474 ~ 1622786 (-)
CI01000063_01669384_01670016 HBAE1 coding upstream 105796 1669317 ~ 1672019 (-)
CI01000063_01682341_01683245 NA coding upstream 118758 1682279 ~ 1683245 (-)
CI01000063_01802070_01805063 FOXJ1B coding upstream 238181 1801702 ~ 1805475 (-)
CI01000063_01809470_01817028 MGRN1A coding upstream 245874 1809395 ~ 1817028 (-)
G263135 NA non-coding downstream 22258 1540485 ~ 1540792 (-)
G263180 NA non-coding downstream 22851 1539953 ~ 1540199 (-)
G263178 NA non-coding downstream 26929 1535763 ~ 1536121 (-)
G263132 NA non-coding downstream 53477 1509308 ~ 1509573 (-)
G263119 NA non-coding downstream 58100 1500835 ~ 1504950 (-)
G263183 NA non-coding upstream 282 1563803 ~ 1566540 (-)
G263127 NA non-coding upstream 27180 1590701 ~ 1593377 (-)
G263131 NA non-coding upstream 66306 1629827 ~ 1632556 (-)
G263271 NA non-coding upstream 91501 1655022 ~ 1655367 (-)
G263274 NA non-coding upstream 94019 1657540 ~ 1657959 (-)
CI01000063_02177769_02178239 NA other upstream 612918 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 761591 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1162238 2725759 ~ 2726535 (-)
G265567 NA other upstream 3598973 5183279 ~ 5183287 (-)

Expression


Co-expression Network