G263183


Basic Information

Item Value
gene id G263183
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1563803 ~ 1566540 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298745
CCTCTTGTTGAACTCCAGAGCCTTGGGTTTGCGGTCCTGACGCATGCCGTCTGTGTCGTTCTGAGAGATCTCTAGGCTGCCGCTGCTGCGTTTCTGACGGCTGCCCATGCACAGCACCCCTAGACGCAGTGTTCGGCCCTGAGAGGCCTTTATCAAAGCTGCAGCCATCTCATGGTGCTTTACAGGGATCCCATTAACCTCCATGACATAATCTCCAGCTCTGAGACCACTACGACCCGCTGGAGAGCAGGGGGAGCAATCCTCCACCAGCAGCGGGCAGTCTCCCACTATAGTGAATCCGAAGCGACCATCAGGGCCTGGAGTAATATCCATCTGTTGGATGCGTGAAACCACTCCAATACTGGGCGGGATGTTTCGTTGTGACTGGGCAAGGGCTATAACCTCTTGAGCACCAAGACTGGAAACATTCTGTCCCTCAATCTCCAAGACCTGGTCTCCAGGTTGCAGTCCAGACAGCTGAGCACTGCTTCCCTCCTCCACAGTCAGGATGTAGCTGGGCCCATTCCCCCCTATCTGAAAGCCAAACTCCTCTGGCCAGCCCTGGTTGGATGCTGGCATGGTGAGGACTGTGAAAATGATGGCAAATAGAGGATATGTGCTCTCTAATAGGCAACTAGGGTCCAAATGTTCATCAGCCTGTTGTAAACAAGACCTACTTATGCACAGCAGAATGATCAAGTCTCCTGAGAAAAATGGAAATTTGCAGTGCAACACTGCAGACACATGCTTAAAACAATATCCAGACACTAAAATATGTCAAGCACCTTATACCTAGACCGATAAATGTGTCAGGTTATGTGAATTTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU298745 True 829 lncRNA 0.51 2 1563803 1566540

Neighbor

gene id symbol gene type direction distance location
CI01000063_01557732_01560541 ZDHHC4 coding downstream 3262 1557653 ~ 1560541 (-)
CI01000063_01554604_01555607 PGP coding downstream 8196 1553980 ~ 1555607 (-)
CI01000063_01548731_01553329 BRICD5 coding downstream 10474 1548447 ~ 1553329 (-)
CI01000063_01541176_01541412 NA coding downstream 21232 1541086 ~ 1542571 (-)
CI01000063_01510130_01526860 NA coding downstream 36031 1510070 ~ 1527772 (-)
CI01000063_01603848_01622589 NA coding upstream 36934 1603474 ~ 1622786 (-)
CI01000063_01669384_01670016 HBAE1 coding upstream 102777 1669317 ~ 1672019 (-)
CI01000063_01682341_01683245 NA coding upstream 115739 1682279 ~ 1683245 (-)
CI01000063_01802070_01805063 FOXJ1B coding upstream 235162 1801702 ~ 1805475 (-)
CI01000063_01809470_01817028 MGRN1A coding upstream 242855 1809395 ~ 1817028 (-)
G263182 NA non-coding downstream 282 1563050 ~ 1563521 (-)
G263135 NA non-coding downstream 23011 1540485 ~ 1540792 (-)
G263180 NA non-coding downstream 23604 1539953 ~ 1540199 (-)
G263178 NA non-coding downstream 27682 1535763 ~ 1536121 (-)
G263132 NA non-coding downstream 54230 1509308 ~ 1509573 (-)
G263127 NA non-coding upstream 24161 1590701 ~ 1593377 (-)
G263131 NA non-coding upstream 63287 1629827 ~ 1632556 (-)
G263271 NA non-coding upstream 88482 1655022 ~ 1655367 (-)
G263274 NA non-coding upstream 91000 1657540 ~ 1657959 (-)
G263275 NA non-coding upstream 93017 1659557 ~ 1659970 (-)
CI01000063_02177769_02178239 NA other upstream 609899 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 758572 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 1159219 2725759 ~ 2726535 (-)
G265567 NA other upstream 3595954 5183279 ~ 5183287 (-)

Expression


Co-expression Network