Item | Value |
---|---|
gene id | G263275 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000063 |
NCBI id | null |
chromosome length | 7808773 |
location | 1659557 ~ 1659970 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU298847 | False | 244 | lncRNA | 0.50 | 2 | 1659557 | 1659970 |
TU298848 | True | 277 | lncRNA | 0.50 | 2 | 1659557 | 1659970 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000063_01603848_01622589 | NA | coding | downstream | 36771 | 1603474 ~ 1622786 (-) |
CI01000063_01557732_01560541 | ZDHHC4 | coding | downstream | 99016 | 1557653 ~ 1560541 (-) |
CI01000063_01554604_01555607 | PGP | coding | downstream | 103950 | 1553980 ~ 1555607 (-) |
CI01000063_01548731_01553329 | BRICD5 | coding | downstream | 106228 | 1548447 ~ 1553329 (-) |
CI01000063_01541176_01541412 | NA | coding | downstream | 116986 | 1541086 ~ 1542571 (-) |
CI01000063_01669384_01670016 | HBAE1 | coding | upstream | 9347 | 1669317 ~ 1672019 (-) |
CI01000063_01682341_01683245 | NA | coding | upstream | 22309 | 1682279 ~ 1683245 (-) |
CI01000063_01802070_01805063 | FOXJ1B | coding | upstream | 141732 | 1801702 ~ 1805475 (-) |
CI01000063_01809470_01817028 | MGRN1A | coding | upstream | 149425 | 1809395 ~ 1817028 (-) |
CI01000063_01856270_01877031 | MKL2A, MKL2 | coding | upstream | 196275 | 1856245 ~ 1877095 (-) |
G263274 | NA | non-coding | downstream | 1598 | 1657540 ~ 1657959 (-) |
G263271 | NA | non-coding | downstream | 4190 | 1655022 ~ 1655367 (-) |
G263131 | NA | non-coding | downstream | 27001 | 1629827 ~ 1632556 (-) |
G263127 | NA | non-coding | downstream | 66180 | 1590701 ~ 1593377 (-) |
G263183 | NA | non-coding | downstream | 93017 | 1563803 ~ 1566540 (-) |
G263277 | NA | non-coding | upstream | 4664 | 1664634 ~ 1665078 (-) |
G263278 | NA | non-coding | upstream | 5560 | 1665530 ~ 1665799 (-) |
G263279 | NA | non-coding | upstream | 6979 | 1666949 ~ 1667844 (-) |
G263283 | NA | non-coding | upstream | 27329 | 1687299 ~ 1687525 (-) |
G263286 | NA | non-coding | upstream | 30788 | 1690758 ~ 1691170 (-) |
CI01000063_02177769_02178239 | NA | other | upstream | 516469 | 2177747 ~ 2178395 (-) |
CI01000063_02326799_02327290 | CBY1 | other | upstream | 665142 | 2326741 ~ 2327309 (-) |
CI01000063_02725759_02726399 | NA | other | upstream | 1065789 | 2725759 ~ 2726535 (-) |
G265567 | NA | other | upstream | 3502524 | 5183279 ~ 5183287 (-) |