G263339


Basic Information

Item Value
gene id G263339
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1838660 ~ 1838865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298925
AGTCATTGTGAGCTTGTCAATGTTCAGGTGGTCGATGTGTTTTGTGTGTGTGTAAGGGAGGGGAGGGATGTTTGTCCAAACATGTGTCCATTGGTGCTCATTGAGCATGTCTGTGAAACATTGAGAGCCACTTCCTGTTTAAGAGGAAGCAGCTGGAGTTGAGCAGTGAGTGGGGAATGAAAAGCCTGACACATGAGAGCCGGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU298925 True 206 lncRNA 0.49 1 1838660 1838865

Neighbor

gene id symbol gene type direction distance location
CI01000063_01809470_01817028 MGRN1A coding downstream 21632 1809395 ~ 1817028 (-)
CI01000063_01802070_01805063 FOXJ1B coding downstream 33185 1801702 ~ 1805475 (-)
CI01000063_01682341_01683245 NA coding downstream 155415 1682279 ~ 1683245 (-)
CI01000063_01669384_01670016 HBAE1 coding downstream 166641 1669317 ~ 1672019 (-)
CI01000063_01603848_01622589 NA coding downstream 215874 1603474 ~ 1622786 (-)
CI01000063_01856270_01877031 MKL2A, MKL2 coding upstream 17380 1856245 ~ 1877095 (-)
CI01000063_01890725_01899483 ERCC4 coding upstream 51527 1890392 ~ 1899546 (-)
CI01000063_01915989_01944590 CPPED1 coding upstream 76558 1915423 ~ 1944590 (-)
CI01000063_02032344_02033792 NA coding upstream 192663 2031528 ~ 2033999 (-)
CI01000063_02041246_02172429 SNX29 coding upstream 202381 2041246 ~ 2172429 (-)
G263338 NA non-coding downstream 1252 1837196 ~ 1837408 (-)
G263335 NA non-coding downstream 5283 1833074 ~ 1833377 (-)
G263334 NA non-coding downstream 5609 1832590 ~ 1833051 (-)
G263307 NA non-coding downstream 96128 1742297 ~ 1742532 (-)
G263305 NA non-coding downstream 97655 1740754 ~ 1741005 (-)
G263340 NA non-coding upstream 426 1839291 ~ 1839603 (-)
G263345 NA non-coding upstream 4433 1843298 ~ 1843535 (-)
G263218 NA non-coding upstream 11080 1849945 ~ 1854122 (-)
G263256 NA non-coding upstream 16149 1855014 ~ 1855386 (-)
G263350 NA non-coding upstream 62464 1901329 ~ 1901541 (-)
CI01000063_02177769_02178239 NA other upstream 337574 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 486247 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 886894 2725759 ~ 2726535 (-)
G265567 NA other upstream 3323629 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 3349538 5188403 ~ 5189645 (-)

Expression


Co-expression Network