G263218


Basic Information

Item Value
gene id G263218
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1849945 ~ 1854122 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298789
TGTAATCTAATTTTAAAGACAGTCATATTGTTTGAAGGATGACTGACTGCAGACCAGAGGAATCAATTCATGGTTTATTCATGGTTTAAGTAGCTGGAATATCAGATTCATAAATGGCCAATCTTGGATGAGTTTGCCAAGAGCATTTGGCTTGATGTGGATTAAGAATCGCAGACAGATTCATTTCTTCAGTCCTAGAAACATGAAAACCTATTTTGAAGACTTAATTTATGTCATGGATCAGCTCTCAGTTTCAGCCAAATGAAAAAAAAAATAACGTCCAATTTTGATTAACAGTTATATACTGTTGTGAAAGGGTCTGAAATGAATCAAATTTGATGTAAATAATCTACGAGAACTAATATTTGTATAAAAAAAGAAAAGAAAAAAGAAAAACTGTCACGTCTGACTTGTTGGATGTCCAACCCCTTGTTTGTGTGTATGTGAATTGTGAAGTGTGTTCTTCACTTCAGTGGAATGTTGTGTGTTCGACTCAATTGATTTTAGGTGCATCATACTGTAAGGACGTTCTAGTTCCAGAAATTTTTCCCACACTTTTCTCAGTTTGGTTCGCACAGTGGTCACTATATTTTGCGTTATGTGCTTCTTATTGATGCCATGGAACAAAGCTCCGTTAGAGACGCTGCTTTTAGAAAGAGATTATGTAAATGAAGCCATCAGAAGTGACAACTGACACTAAATACAGTGATCTCTCTAACAGCACTATATGTTATGTATGAACATAGAGGATCTTTGTACTGTTTATTCCTCCTGTAAATGGAGTTTTGAAAATGCTCTCTGGGGTTGTTTCAGAAGCAAACCAGACGGTTGAAGTGGTTACTGATGACTTTACTGCATGCTAAATGTCACTGGCAGCTTAATAATTCATTTGTTGAGGGAGTCTGAGAACATAATGATCCAGATTTGTCTGCTTTCATTGTTCTGAAAATTTTAGCAGGCCTGTTTTGTCAGGTTCTTGTACTAAATATCTGTGTGTGTGTGTGTGTGTTTGTATGCTTGAGCGTCTTTGTCTGTTTTGCTGCCTTTTTGTTCGAAATCAGACCATCCAAATGAAATATCTTTGTAAATGAACAACATTATATATATATATGAAAATATCTTGGCAGCATGTGAATAATCAAATTGATGTGATATCTTTCAGAGAAACTTCCTCTTGTTGATTTTCTTTTTAGCCCTTTCTGATTTTATCTATGTTTTTCTTTCATGTTGTCAGCCACCTCATGGAAAAAAATTATTATTCGTATATATATATATATATATATATATATATATATATCCTGTTCTGACGTGACTCCTTTCCATTCAGCAAGGCAATATGCGTCCACTGGCTTTGAACTCACCTCTCTCAAATGTGAAGCGAGTTTTGTTTGATCCAAAGGGGGTTTCAATTATACGTTATTTGTACAAGATGTACAGCACTTTCCTGCTGCAGTGACGAACTGCTCATCACAGTTAGATCAACCGCACAGCGTTAAAGCACCTTTACAGATGAGCTTTTATAAAAGAAAACTTTTATCAGCTTTTTGTGCTTCAGTGTTACATGTGTCGTCCACTCAAAAGTCGGATGATTAACGATGCTCATCGGCTTAGTTTTTAAGGCTTTGTACTGTTTGCTCTGCGTACTGTCCAAATTGTGGCCTCTCCAGGGAAGTAAAAATGCCAAATACTAGTCTCAACTAGTATAATCATTCACTGCTGTGTGTAGCTATGGGGACAAATTTATAAGGAATAATACATGTGTCTGACTGTTCAGAGCCATTTTTGGCATTACTGACCGCTGTTATTATGCAGCCTGGAGTAATTTTTTATGTACCCCTATTAAACTATTATTCTGACAAGCAAGTGAAGGAGAAAGACTAGTATACACTGACATCGCTAGATTTCCATCATGTGATGCCTCTTGTGTTTTAGAGCTTCTGTGGGTTTCAAATGACCAAAGAGGCCAAATATTGTACTATGCCACTTCATGTAGATATATACACTACCTTCAAAAGTTTGGGGTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAATTAATACCTTTATTCAGCAAGGATGCATAAAATTGATCAAAAGTATCAGTAAAGACATTTACACTGTTAGAAAATATTTCTATTTCAAATAAACGCTGTTCTTTTGAACTTTCTGCTCATCAAAGAATTCTAAAAAAAAAAATGTATCAAGGTTTCCACAAAAATATAAAGCAGCACAACTGTTTTTAACTTTAATAATAATATGCTTTTTATTTCTTAAAGGTGCAATGTGTAAGATTTGGGAGGATCTATTCACAGAAATGCAATAAACATAACTATGTTTTCAGTGGTGTACAAAGACCTTACATAATGAACCGTTATGTTTTTATTACCTTAGAATGAGTATCTACATACACCGCGGGTCCCACTTCCATGTCAAGTTGTCATTTTGTGCCGGCATGTTTCTACAGCAGCCCTAAACGGACAAACACTCTATAGAGCGTGTTTCATCGCTATGTTGTTGTTCTTCTAAATCGTTCGAGTGTTTAGAGGCAGCTTGCATCGTCAATACGTTGAATACGCACAAAGAAGTAGTAGTAGTCGTCTGGTTTATTAGAAGCAGAGACCGTTCTTTGTTAGAAGTAAGAAGAAACCTCATTGCTTGGCTGGCTAATGAACTCTCTGCTGTCTCAGACGATGACATCTTTGACTAATGTTGGCCAGACGGCCACCGTAGCTTCTCTATTTTGCTTCAAAAGGGAGGGGTGAGCTGCCTTTGGTTGCAGTTCGCAACCTCACCGCTAGATGCCGCAAAAATTTACACACTGCACTTTTAAGCTGCAAATCTGGATATTAGAATGATTTCGGAAGTATCATGTGACACTGAAGACTGGAGTAATGGCTGCTGAAAATTCAGATTTGCCATCACAGGAATAAATTACATTTTAAAAAATATTTAAAATAGTAATATTATGAAATATTATTACAGTAAAGGCTGATAAAATAAATGCAGCCTTTGTGAGAATAATTCTTTCAAAATCATTGAAAAATCTTACTGATTCCAAACTTTTGTATGGTAGTGTAGGTGGTTGAGGATTTTTCTTGGAGAAAATGTTTAATCTTTATTGGATTTAGGTGATTGTAAAAAGGTTGGAGATGAAGAGTTAATACAAGTGTCACGTTTGCTGTTTAATAGTGCAGTTGGAGAGTAAAGCAATAACTTGCATTTTATATACAGTGCTGTATTGTATACGGTATATGCAGTAGATGAGATATCAGAGCATCTCTTCAGTTTTACGTCATCTATTTGCATGAACGTCTGTTGTGGCTGAGCTCTGGAAACCTGTGGCTTGCGTTTTTGCCATTTAGGATGTCAAAGCTCAGCTCCTGTTAAGCTTCATGTAGAGATTTAGGATTCCTCATTTTCAACAACGTCTGCTGGACTCATCTAGATATCATGCTCTTTATCAAATATTAATGTATATTATGTATCAGTGGTGATGACACTGGGCAATATTTCCTGCCGCCTTTGAACATGCTCCAAAGCGGGAGATCAATCATCATTTGTATGCCATATGTTTTGCACATTGTGTACATATTTCAATGGATGTAGTACATATTTTTATACATGTTTGGCGCATCCATGAGCTATATTTTGTGAATAGTTTTAAAGATACAAGTATATATACGCCATCACGTGTCAATAGATGTATTGTGAAAATACTGTCGTAGAGGATGTTTTAGAGTCTCTTAAATATATCAGAGGAATGACATGCAAAACTTTGTCTGTTATTATTTGTCATAAGAGATGTCGAAACAGTTATTTTTATATTCTCAATGTTTAATATTACACATCATTTCAAGTTGTAATTGGACTCTTTGGGTCTTCCATGATGTATTAGAATGTTTCGTGTACAAAAAAACAAATCCATTGTTTTCATAGTGACATTTAATACAATATATTTACTATAACTGTTCTTCAGGCTCATTTACCTGACTATTACATGAGTGCATACTAGTAGTATATTAAGAGAAACATGAATGTCACTCAAACCTGGCCATTTCAGTTTGAATATCAGTAAGAAAAGACATTACATTGATAAACATCTTTTGTCTTGAGGGCTTGGATTGTTATCCAGATTTGGAGAAACTTTTACTGCACTACATTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298789 True 4178 lncRNA 0.35 1 1849945 1854122

Neighbor

gene id symbol gene type direction distance location
CI01000063_01809470_01817028 MGRN1A coding downstream 32917 1809395 ~ 1817028 (-)
CI01000063_01802070_01805063 FOXJ1B coding downstream 44470 1801702 ~ 1805475 (-)
CI01000063_01682341_01683245 NA coding downstream 166700 1682279 ~ 1683245 (-)
CI01000063_01669384_01670016 HBAE1 coding downstream 177926 1669317 ~ 1672019 (-)
CI01000063_01603848_01622589 NA coding downstream 227159 1603474 ~ 1622786 (-)
CI01000063_01856270_01877031 MKL2A, MKL2 coding upstream 2123 1856245 ~ 1877095 (-)
CI01000063_01890725_01899483 ERCC4 coding upstream 36270 1890392 ~ 1899546 (-)
CI01000063_01915989_01944590 CPPED1 coding upstream 61301 1915423 ~ 1944590 (-)
CI01000063_02032344_02033792 NA coding upstream 177406 2031528 ~ 2033999 (-)
CI01000063_02041246_02172429 SNX29 coding upstream 187124 2041246 ~ 2172429 (-)
G263345 NA non-coding downstream 6410 1843298 ~ 1843535 (-)
G263340 NA non-coding downstream 10342 1839291 ~ 1839603 (-)
G263339 NA non-coding downstream 11080 1838660 ~ 1838865 (-)
G263338 NA non-coding downstream 12537 1837196 ~ 1837408 (-)
G263335 NA non-coding downstream 16568 1833074 ~ 1833377 (-)
G263256 NA non-coding upstream 892 1855014 ~ 1855386 (-)
G263350 NA non-coding upstream 47207 1901329 ~ 1901541 (-)
G263356 NA non-coding upstream 56026 1910148 ~ 1910370 (-)
G263260 NA non-coding upstream 95725 1949847 ~ 1988854 (-)
G263394 NA non-coding upstream 141644 1995766 ~ 1996104 (-)
CI01000063_02177769_02178239 NA other upstream 322317 2177747 ~ 2178395 (-)
CI01000063_02326799_02327290 CBY1 other upstream 470990 2326741 ~ 2327309 (-)
CI01000063_02725759_02726399 NA other upstream 871637 2725759 ~ 2726535 (-)
G265567 NA other upstream 3308372 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 3334281 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G169820 NA non-coding NC_053127.1 CM020924.1 30140184 ~ 30140414 (+)
striped catfish (Pangasianodon hypophthalmus) G194450 NA non-coding NC_047606.1 CM018552.1 10836425 ~ 10838676 (-)