G263448


Basic Information

Item Value
gene id G263448
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2438400 ~ 2438887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU299041
CTCACATTCACAGTTGGCTGGGCATTTGACTTTATCTGGGGGTGGGGTTGTGGGCAGTGTAGGCAGTCTGCTCTGCTCCTCCAGCTCAGCCTTCAACATGGCCTCCTGGCTCTGACAGCGCAAATCAACGGGCTGTACCGCCTCCAGATTCTCATCGGACAGATGTGCAGGACCTCCACATGTACCACCCAGGCGAACGCGCTCCCGTATCGCCCACTCGCGCAAAGGCCGCATGTAGCAGCTGCAGTAGATGGGGTTGCCTGCCAGATTGAGTCGAGTCAGTTTGGGAGAGCCAGGGGCCATTGGCTGCAGGACGCGCAGCTGGTTGTGGCTTAGGTCCAGATGAGCGAGATGGGGAGAGAGCAGGATAGCTGCATTTGAAAAATCCTGCAGGGAGTTGTGATCCAGGAAGAGGTGAGTGAGCTTGGGCATAGATACAGACTCCTCTCCAAGGTAGGTCATGGGGTTGTAGCTTAGCTCTAAGCGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU299041 True 488 lncRNA 0.57 1 2438400 2438887

Neighbor

gene id symbol gene type direction distance location
CI01000063_02416343_02425379 NA coding downstream 12860 2416273 ~ 2425636 (-)
CI01000063_02404812_02415053 KCTD17, KCD17 coding downstream 23347 2404142 ~ 2415053 (-)
CI01000063_02357993_02360597 PHF5A, BRAFLDRAFT_57503 coding downstream 77803 2357926 ~ 2360597 (-)
CI01000063_02326799_02327290 CBY1 coding downstream 111110 2326741 ~ 2327309 (-)
CI01000063_02321620_02324262 NA coding downstream 113835 2321544 ~ 2324565 (-)
CI01000063_02444203_02454140 L3MBTL2 coding upstream 5262 2444149 ~ 2454281 (-)
CI01000063_02496694_02509735 JOSD1 coding upstream 57125 2496012 ~ 2509735 (-)
CI01000063_02512138_02519529 XRCC6 coding upstream 73045 2511932 ~ 2519537 (-)
CI01000063_02580025_02597121 MKL1B coding upstream 140990 2579877 ~ 2597249 (-)
CI01000063_02621471_02632801 RGS9B, RGS9 coding upstream 181764 2620651 ~ 2632801 (-)
G263447 NA non-coding downstream 589 2437472 ~ 2437811 (-)
G263444 NA non-coding downstream 2082 2436106 ~ 2436318 (-)
G263443 NA non-coding downstream 2643 2435511 ~ 2435757 (-)
G263442 NA non-coding downstream 3089 2435100 ~ 2435311 (-)
G263250 NA non-coding downstream 6309 2431377 ~ 2432091 (-)
G263449 NA non-coding upstream 1815 2440702 ~ 2441119 (-)
G263451 NA non-coding upstream 18802 2457689 ~ 2457888 (-)
G263257 NA non-coding upstream 21274 2460161 ~ 2467875 (-)
G263265 NA non-coding upstream 44947 2483834 ~ 2494457 (-)
G263458 NA non-coding upstream 75931 2514818 ~ 2515086 (-)
CI01000063_02177769_02178239 NA other downstream 260064 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 768324 1669317 ~ 1672019 (-)
CI01000063_02725759_02726399 NA other upstream 286872 2725759 ~ 2726535 (-)
G265567 NA other upstream 2723607 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 2749516 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 3107814 5615806 ~ 5617112 (-)
G265976 NA other upstream 3849271 6283058 ~ 6290946 (-)

Expression


Co-expression Network