G262413


Basic Information

Item Value
gene id G262413
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2718858 ~ 2719317 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297867
ATTTACGCTGCTTGCAATTATAGTAGCAGCAGTTGTTTTGGGCAGAAATAAAGGCCCGTCAAAGAGCACCCATCAAACTACTGCTGTTGTGGAGGAGAGAGCTGGTCCAGATCCTGGAGCTTCCTCACAGTATCATGACAAACACTGTAATGAAACAGGCAACAGCTGCAATCTAGTGCGAAGAGCCACAAAGCCAAAGATGAAACTATGAAACATGTCAAGGATTCAAACTCAGATAATGTGGAAGAAGTGTGTAAGTCCGATTCTCCAGTTCACTCCTCCACCATTGGTTGGGGGGAGGATTCTTCTGAGTCTTTGATAAGGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297867 True 327 lncRNA 0.45 2 2718858 2719317

Neighbor

gene id symbol gene type direction distance location
CI01000063_02697497_02705829 NA coding upstream 12993 2697376 ~ 2705865 (+)
CI01000063_02691683_02695421 STX4 coding upstream 23330 2691683 ~ 2695528 (+)
CI01000063_02683852_02690204 NA coding upstream 28343 2683441 ~ 2690515 (+)
CI01000063_02666157_02672420 ARSG coding upstream 46438 2665215 ~ 2672420 (+)
CI01000063_02654022_02654466 NA coding upstream 64220 2654022 ~ 2654638 (+)
CI01000063_02744075_02750377 ST6GALNAC1.1 coding downstream 24758 2744075 ~ 2750586 (+)
CI01000063_02757057_02761321 NA coding downstream 37475 2756792 ~ 2761514 (+)
CI01000063_02788126_02820510 CASKIN2 coding downstream 68809 2788126 ~ 2820588 (+)
CI01000063_03135170_03135337 NA coding downstream 415821 3135138 ~ 3135403 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding downstream 494315 3213632 ~ 3234293 (+)
G262434 NA non-coding upstream 11659 2667066 ~ 2707199 (+)
G262728 NA non-coding upstream 85147 2633171 ~ 2633711 (+)
G262726 NA non-coding upstream 89892 2628069 ~ 2628966 (+)
G262422 NA non-coding upstream 94992 2620466 ~ 2623866 (+)
G262443 NA non-coding upstream 126413 2590690 ~ 2592445 (+)
G263552 NA non-coding downstream 107493 2826810 ~ 2827031 (+)
G263588 NA non-coding downstream 148205 2867522 ~ 2867784 (+)
G263611 NA non-coding downstream 168618 2887935 ~ 2888140 (+)
G263629 NA non-coding downstream 186549 2905866 ~ 2906180 (+)
G262436 NA other upstream 4341 2713615 ~ 2714517 (+)
G262423 NA other upstream 475893 2241408 ~ 2242965 (+)
G262194 NA other upstream 1573851 1139352 ~ 1145007 (+)
G262060 NA other upstream 2008304 710110 ~ 710554 (+)
G261984 NA other upstream 2051476 665800 ~ 667382 (+)
G265391 NA other downstream 3194466 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 3615961 6335618 ~ 6338283 (+)

Expression


Co-expression Network