XLOC_010356


Basic Information

Item Value
gene id XLOC_010356
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 66537 ~ 67707 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022064
acacacacacacacacacacacacacacactgctttggCTTAGAAGAGCCAGCTGAATGTGTTGACGTGTGTTTGACAGCACGCTGCTGTAGAGCAGGTTTCTCCTCACTGATCAGCATCATTGATCACTGATCAGCATCTGTCTGCTGTTCTCAGGTCAGTGTTCTCTCAGTGTGAGCGCGGGTCTTCAGTCCACACGCGCTAATGTTCTGCTGAATGTGAAGGGGCGGGGCTTCTGTGCAGGCGGGCGGTATTTGTCACAGTAAACACGCCCCTAACTGCTGAACTCGAGCGGCGGCAGCGGCAGATCTTCAGTCCCGGCTGGAGGACGAGCAGCGCgggctgtctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaatataaCTATTGTATACATTAGCATTTACCTATTTTTATGTCTATTAttccatttttgttttaatatgttctttctctctgtgtttctCTGTGGATTGTGTCTGATATTCATGTTGGTTTGCACTACTGTCTGCCTTGTCTGTACGCAGCGACACTGCACTGATTAGGCAATACTAATGTACAGATAtctgtcatgccaataaagcacctcaaacaAATGTGAAaggtgaatgagagagagagagagagtgtgtgtttttgtgtgtgtgtgttctccagcTGTGTGCTGCTGTGCCGCTAGGTGTCGCAGTGGAGCCGGGTTTGTTTCTAACCCAACACACACTGCAATAGTCAGAGTTGCATAACGACACTCGGCGGTTTGTCTGACATCCTTGTTCTTGTTTACCCGAAACACAGGAGCAGCACAATCATACAACGCTGAaccagtaacacacacacacacagactcccACAGCGGTGTGTGTTCATGAACAGATTATTGAGGAAAAGTtctcatattttattaatattatatcatGACACATTTAACAATtgtaactataataaactaataataagaaaaatctattattaatattattattacgactataattactgtattattaaatgtgtgtgtttgtgcagtaaCTGTTGAACTGATGGACATTAAAACATATAGATATAGACacgtgtatatttatattttctgtcttttactgtataatgattctgagtatatattaatattattgtatat

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0060173 limb development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0040011 locomotion biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022064 True 1171 lncRNA 0.42 1 66537 67707

Neighbor

gene id symbol gene type direction distance location
XLOC_010357 NA coding upstream 105857 173564 ~ 177863 (-)
XLOC_010358 NA coding upstream 136418 204125 ~ 206259 (-)
XLOC_010359 NA coding upstream 160113 227820 ~ 239273 (-)
XLOC_010360 slc6a3 coding upstream 180532 248239 ~ 263658 (-)
XLOC_010361 LO017917.1 coding upstream 210082 277789 ~ 280835 (-)
XLOC_010626 CR392024.2 misc upstream 20827405 20895112 ~ 20895175 (-)
XLOC_010362 NA non-coding upstream 235048 302755 ~ 313553 (-)
XLOC_010363 NA non-coding upstream 278556 346263 ~ 353780 (-)

Expression


Co-expression Network