Item | Value |
---|---|
gene id | G264593 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000063 |
NCBI id | null |
chromosome length | 7808773 |
location | 3802051 ~ 3802307 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU300275 | True | 257 | lncRNA | 0.51 | 1 | 3802051 | 3802307 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000063_03784602_03791834 | ZBTB4 | coding | downstream | 10217 | 3783594 ~ 3791834 (-) |
CI01000063_03772788_03776821 | SHBG | coding | downstream | 25230 | 3772616 ~ 3776821 (-) |
CI01000063_03742908_03771506 | NEURL4 | coding | downstream | 30545 | 3742616 ~ 3771506 (-) |
CI01000063_03695944_03716188 | NA | coding | downstream | 85863 | 3695944 ~ 3716188 (-) |
CI01000063_03667811_03688065 | NSFB, NSF.L, NSFA, NSF | coding | downstream | 113986 | 3667541 ~ 3688065 (-) |
CI01000063_03879695_03885921 | ZCCHC4 | coding | upstream | 76984 | 3879291 ~ 3886018 (-) |
CI01000063_03894170_03896007 | ZCCHC4 | coding | upstream | 91863 | 3894170 ~ 3896196 (-) |
CI01000063_04056574_04087071 | MKXA, MKX | coding | upstream | 253889 | 4056196 ~ 4088615 (-) |
CI01000063_04101695_04159421 | ARMC4 | coding | upstream | 299095 | 4101402 ~ 4159421 (-) |
CI01000063_04183070_04264881 | MPP7A, MPP7 | coding | upstream | 380273 | 4182580 ~ 4264881 (-) |
G264406 | NA | non-coding | downstream | 1514 | 3797223 ~ 3800537 (-) |
G264404 | NA | non-coding | downstream | 138150 | 3661599 ~ 3663901 (-) |
G264582 | NA | non-coding | downstream | 152319 | 3649494 ~ 3649732 (-) |
G264581 | NA | non-coding | downstream | 155475 | 3646365 ~ 3646576 (-) |
G264580 | NA | non-coding | downstream | 156651 | 3645165 ~ 3645400 (-) |
G264383 | NA | non-coding | upstream | 3130 | 3805437 ~ 3807805 (-) |
G264595 | NA | non-coding | upstream | 21194 | 3823501 ~ 3832858 (-) |
G264602 | NA | non-coding | upstream | 159220 | 3961527 ~ 3964475 (-) |
G264646 | NA | non-coding | upstream | 162754 | 3965061 ~ 3965707 (-) |
G264647 | NA | non-coding | upstream | 163720 | 3966027 ~ 3966241 (-) |
CI01000063_02725759_02726399 | NA | other | downstream | 1075516 | 2725759 ~ 2726535 (-) |
CI01000063_02326799_02327290 | CBY1 | other | downstream | 1474332 | 2326741 ~ 2327309 (-) |
CI01000063_02177769_02178239 | NA | other | downstream | 1623715 | 2177747 ~ 2178395 (-) |
CI01000063_01669384_01670016 | HBAE1 | other | downstream | 2131975 | 1669317 ~ 1672019 (-) |
G265567 | NA | other | upstream | 1360187 | 5183279 ~ 5183287 (-) |
CI01000063_05189361_05189645 | CRIPT | other | upstream | 1386096 | 5188403 ~ 5189645 (-) |
CI01000063_05616519_05617045 | NA | other | upstream | 1744394 | 5615806 ~ 5617112 (-) |
G265976 | NA | other | upstream | 2485851 | 6283058 ~ 6290946 (-) |
G266797 | NA | other | upstream | 3487188 | 7289495 ~ 7290224 (-) |