G264802


Basic Information

Item Value
gene id G264802
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4401928 ~ 4402606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300500
ACCAATAAACCTCCTTACAACAATATAAATGTACAATATTATATATTTAAAAGTAAATCTAGAAGCAATTTAGAATTTAGAAGCAAAATTGTGTAAGATGTTGAGACTTACTTTTAGATTTTTGACTTATTTCAATGTAACTTTATTTCAAGTTTTTTATTACCCCATTAGCAATTGTATTTTTTCAGCATTTAAATGTGTGTAATCACTGCTTGTGTTAGTGTCTTCAAATAATGAACTTATAGATTTACACTGAAATCAAACATTAGGAAGCCAGACAGAAGGAGACTGTGAATCAAGAAACAGTGATATTGAGATTCCAGTTCCTCTAAACAGAGTCAGGTTTATGGGTATAGATTTCGGTGCTGCTTCCTCTCTAGACCTTCTGCCCAAATCAATTACACACACATACAGGTTACCAAGTCGATGAAGGTATAGAGAGCTTTATCCATGAGTCAATGTCTGTGTCTCCATCTTCTCAGTAGCTCCATTTTTATTAGACAGAGGCAGGTGTGTGTGTCTGTGTTCATGGGGGTTTATATGACAACAATTTCCCATGTTCACATCCTACAGTAATTATTGATAAGACACTGGCTCAACTCACCCCAACTGGATCAATGGGATCAGAAAATGTAACTTCTGGAGGAGAAGATGTAGCTTCTGGAGGGGAAGATTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU300500 True 679 lncRNA 0.35 1 4401928 4402606

Neighbor

gene id symbol gene type direction distance location
CI01000063_04183070_04264881 MPP7A, MPP7 coding downstream 137047 4182580 ~ 4264881 (-)
CI01000063_04101695_04159421 ARMC4 coding downstream 242507 4101402 ~ 4159421 (-)
CI01000063_04056574_04087071 MKXA, MKX coding downstream 313313 4056196 ~ 4088615 (-)
CI01000063_03894170_03896007 ZCCHC4 coding downstream 505732 3894170 ~ 3896196 (-)
CI01000063_03879695_03885921 ZCCHC4 coding downstream 515910 3879291 ~ 3886018 (-)
CI01000063_04471188_04479927 MAP3K8 coding upstream 67294 4469900 ~ 4479927 (-)
CI01000063_04667829_04669237 CHAC2 coding upstream 264560 4667166 ~ 4669237 (-)
CI01000063_04834309_04848552 NA coding upstream 431441 4834047 ~ 4848720 (-)
CI01000063_05056169_05057789 FOXN2B, FOXN2 coding upstream 653563 5056169 ~ 5057855 (-)
CI01000063_05070661_05081280 FBXO11A, FBXO11B, FBXO11 coding upstream 667817 5070423 ~ 5081280 (-)
G264803 NA non-coding downstream 327 4400222 ~ 4401601 (-)
G264801 NA non-coding downstream 22274 4379424 ~ 4379654 (-)
G264794 NA non-coding downstream 40134 4361562 ~ 4361794 (-)
G264721 NA non-coding downstream 65670 4335074 ~ 4336258 (-)
G264755 NA non-coding downstream 80210 4241756 ~ 4321718 (-)
G264805 NA non-coding upstream 340 4402946 ~ 4403561 (-)
G264806 NA non-coding upstream 3435 4406041 ~ 4406299 (-)
G264854 NA non-coding upstream 26778 4429384 ~ 4429729 (-)
G264857 NA non-coding upstream 28252 4430858 ~ 4431159 (-)
G264862 NA non-coding upstream 34783 4437389 ~ 4437615 (-)
CI01000063_02725759_02726399 NA other downstream 1675393 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 2074209 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 2223592 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 2731852 1669317 ~ 1672019 (-)
G265567 NA other upstream 759888 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 785797 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 1144095 5615806 ~ 5617112 (-)
G265976 NA other upstream 1885552 6283058 ~ 6290946 (-)
G266797 NA other upstream 2886889 7289495 ~ 7290224 (-)

Expression


Co-expression Network