G264868


Basic Information

Item Value
gene id G264868
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 4463127 ~ 4463731 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300580
AAAAAAGTCATTCAGTTTAACCAAAATTTCGGTTTTACCGAATGACACTTTTGGTTATACTGAATGACGATATTTTCAAACAGTGCTAACAGGCTGATATCTAGCTAGCTAGTTAGCTTGCTAGCTACCTAGCAAAAGGACAATGAAACATTTTATATTTAGTACAAGTTTTTAAAATATTACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCAGGACATGCGTATGAGCAAGTGAAAACATTAATTTTTCAAATAGTTAAAAGAGAGTTAATTACTTTGCTTCATGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGCCACATCCTGTCACATGATATTGACCGCATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCTGAATGACATCAATGAAATTCCTTTTTCCGGACATTCTTTCTCATAACAAAGCAACGACTTCTACACATAATTTTAATACCGTTTTGCACTATGTTGATATATGATGTTATAAAATCATGCCAGAATAAAAAATATATACATTACATTTTAAGATATTTTAATCACAAATGAAATGGCTGTATTGGCCTTTGGACGGTTAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU300580 True 605 lncRNA 0.33 1 4463127 4463731

Neighbor

gene id symbol gene type direction distance location
CI01000063_04183070_04264881 MPP7A, MPP7 coding downstream 198246 4182580 ~ 4264881 (-)
CI01000063_04101695_04159421 ARMC4 coding downstream 303706 4101402 ~ 4159421 (-)
CI01000063_04056574_04087071 MKXA, MKX coding downstream 374512 4056196 ~ 4088615 (-)
CI01000063_03894170_03896007 ZCCHC4 coding downstream 566931 3894170 ~ 3896196 (-)
CI01000063_03879695_03885921 ZCCHC4 coding downstream 577109 3879291 ~ 3886018 (-)
CI01000063_04471188_04479927 MAP3K8 coding upstream 6169 4469900 ~ 4479927 (-)
CI01000063_04667829_04669237 CHAC2 coding upstream 203435 4667166 ~ 4669237 (-)
CI01000063_04834309_04848552 NA coding upstream 370316 4834047 ~ 4848720 (-)
CI01000063_05056169_05057789 FOXN2B, FOXN2 coding upstream 592438 5056169 ~ 5057855 (-)
CI01000063_05070661_05081280 FBXO11A, FBXO11B, FBXO11 coding upstream 606692 5070423 ~ 5081280 (-)
G264866 NA non-coding downstream 2358 4460536 ~ 4460769 (-)
G264847 NA non-coding downstream 15816 4445618 ~ 4447311 (-)
G264862 NA non-coding downstream 25512 4437389 ~ 4437615 (-)
G264857 NA non-coding downstream 31968 4430858 ~ 4431159 (-)
G264854 NA non-coding downstream 33398 4429384 ~ 4429729 (-)
G264843 NA non-coding upstream 119442 4583173 ~ 4585093 (-)
G264826 NA non-coding upstream 168967 4632698 ~ 4634214 (-)
G264836 NA non-coding upstream 185516 4649247 ~ 4650765 (-)
G264935 NA non-coding upstream 273403 4737134 ~ 4737382 (-)
G264942 NA non-coding upstream 279587 4743318 ~ 4743555 (-)
CI01000063_02725759_02726399 NA other downstream 1736592 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 2135408 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 2284791 2177747 ~ 2178395 (-)
CI01000063_01669384_01670016 HBAE1 other downstream 2793051 1669317 ~ 1672019 (-)
G265567 NA other upstream 698763 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other upstream 724672 5188403 ~ 5189645 (-)
CI01000063_05616519_05617045 NA other upstream 1082970 5615806 ~ 5617112 (-)
G265976 NA other upstream 1824427 6283058 ~ 6290946 (-)
G266797 NA other upstream 2825764 7289495 ~ 7290224 (-)

Expression


Co-expression Network