G265005


Basic Information

Item Value
gene id G265005
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5027145 ~ 5027379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300757
GTGGCTCCTGATCTGAACCCAATCGAACACCTATGGGGAATTCTGAAGAGACAAGTTGAGCATCACTGTCCATCCAGCATCCAGTCTCTAAAAGAGGTCATTCTTGAAGAATGGAAAAAGATAGATGTTGCAAAATGTCGCCAACTTGTTCATTCCATGCCTAGAAGACTTGGTGCTGTCATTAAAGATCATGGAGGCCATACAAAGTACTAGATGTAGTAGTTTTTGTTGTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU300757 True 235 lncRNA 0.43 1 5027145 5027379

Neighbor

gene id symbol gene type direction distance location
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 38146 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 127154 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 136126 4877614 ~ 4891019 (+)
CI01000063_04807641_04810737 NA coding upstream 215957 4807294 ~ 4811188 (+)
CI01000063_04670608_04680828 ASB3 coding upstream 346244 4670608 ~ 4680901 (+)
CI01000063_05034462_05041925 FSHR coding downstream 7083 5034462 ~ 5043319 (+)
CI01000063_05083449_05083858 NA coding downstream 56070 5083449 ~ 5084210 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 81557 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 156240 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 163940 5191319 ~ 5197560 (+)
G265004 NA non-coding upstream 2743 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 12559 5014349 ~ 5014586 (+)
G264946 NA non-coding upstream 154583 4758404 ~ 4872562 (+)
G264960 NA non-coding upstream 271024 4755714 ~ 4756121 (+)
G264206 NA non-coding upstream 531218 4495716 ~ 4495927 (+)
G264948 NA non-coding downstream 43072 5070451 ~ 5074125 (+)
G264945 NA non-coding downstream 57501 5084880 ~ 5085892 (+)
G265040 NA non-coding downstream 108512 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 108962 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 110224 5137603 ~ 5137907 (+)
G262436 NA other upstream 2312628 2713615 ~ 2714517 (+)
G262423 NA other upstream 2784180 2241408 ~ 2242965 (+)
G262194 NA other upstream 3882138 1139352 ~ 1145007 (+)
G262060 NA other upstream 4316591 710110 ~ 710554 (+)
G261984 NA other upstream 4359763 665800 ~ 667382 (+)
G265391 NA other downstream 886404 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1307899 6335618 ~ 6338283 (+)

Expression


Co-expression Network