G264948


Basic Information

Item Value
gene id G264948
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5070451 ~ 5074125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300687
GTTCTTTTCTAGGAAATTAAACCCTTTTAAAATTCATACTAGCATCTACATAATGGTTATTGAAGACTTCACAATATATTAAGTCTAGATGTTATGGTACACATGCATAAAATTCAGGCTGCATGAGAAGCCACAGTCACCACATTACACATAGATGGAGTTTGAGGGGCAAAAAAAAACAACGGGGCTGTAGAGATACTTGTCTCAGCTTCAAAGAGGCAGAGGCCTCTGATATAACCAACTCCAGCAAGGCTTTTCAAAATCGGCATCGTACTTAAAACAGGCACAAGTCAGGCCATGGGCCCAAAAGAATGCAATAAAAATGCTTTTTAAAAGTCAGGATGCACTTTTAACAGTGATGCTATGACCACATAAACAAAAATTAACTGAATGTAAATGTTCTGGGATTGTTTTTAATAGAAATCTTTTCTTTACATTCTCTGTAAGATTACCGGTCAAACATGTTTCAGAATTCTTTGGGCCCTTGGTTAACATGTCAAACTACTTGGAGACTAAAGCTCCAAATATTTAGAAAGGGAACTTGAGAATGAGAAAGATATATACAATAGGCAAAAATAACCCTTTTGTAATAATGGCAGCAACAAAGGTGATGCAAAAATTTCTGAACCTGCATGACCATAAGTTCCACACATCAATCACTCGCATAAAAGAATTTAACTTAAAAAAAAGTCACCTCATTAAAAAGAGAAAAAAAAAATTCTGGAGGACAATTTAGTGTTAGTTTTCTGATCTTTTCTTTGTTATTCCTCTTTCACAGAAAGAACTTATATGCTGAGACATGAGTATGATTACAGCAAGCCTAATGTGTGCTAACAAAAAATATTAATAACAACAATAATAATAATATATAATAAAATAAAAGACATTCAAATACAGTAAGATTTTTTTTTGCCTGAAAATACAAAACTACATGAGAAAGCATTAAAATCATATTTGTAGATCAGAATAACATATTAACATATTTAAAAAAAAAAAAAAAAAAAAAAGCAAGTGCTAATCACATTGTTTTTTGTTTTGTTTTTTGTTAATTTTTTATATCATACATATATTTCAGCACATCTGCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGTCGCCGGGGAAGCCATAATGGTATGGCTCTGCTTCTAATCTGAGAAACCGCAATCTGTAGCTCCCAGTGGCTCCGGTCGCGGTCAGATCTGTACATAAACTGCAGCAGAACTCGTCTTGAATCTCCACATAGCACTGAAGTTGCACAGGGCAGGGCGCACAGCGCAGGGCTATGTGATTGGAAGGACCAAAGAAAGTCTACTCCCTTTCCAAACACCACCACTGTGGCACCCACCGCCATAATCTCCAGAATCCTGAGTCAACATATTGCTTCACAATATTTCACTCTTCCAAATCATCCATCACACTCCCAAGCAGAAGTGAAGAGAACTCCTTGCATTCTCAGTTAGCAATATACAGGAGAATCTGCACCCAGTACTGAGGCAGCTTTACACGGTTTCAGAGTTCTGCATTTCACCTTTCCAAAGATAGTTTCTCTTAAAATGATTAATTCAAAGTCTGACATCTGACGTCTTTTGTTATCCACACACACTTTGCACACCAGGTCTCTCTGGCCCAGAAATGGCAGGCGCTCTGGATTTGTAGTCAGGTAAGATAAAGACCAGGGTGCTGTGATGAAGGATGAGCTCTATCTCAGTTGTGCTGTAATGTGTTGGATTCTATGGGAGGTGCCGAATCATACAGTGTGTCCGTGTCGTGGGTCGGCTCACCGGCCAATGTGCAAGGATTGGACAATGTACCCGCGCCACAGTCACAAAAAAAACCTATCATGCCGTATAAACTCCACATCATGCCCTTGGTGGCACTTCTTAATACAATTCACACAAATTGCATTCCGGTCTGTTGTGTTACAGGTGTGACACCTAATAGAAAAGAATGGAACATAGTGAAATACTACAACCATTTATGTTGGTTTTCAAAGCAGACTGCTTCAAGTTGCCTGCCTTCTGATTACCTGTAGAAATCGTGCATGGGGTAGCTGGTGTAACTGGAAATCTTGTACAGGCACTGACCTCTG
>TU300686
GCCGGGGAAGCCATAATGGTATGGCTCTGCTTCTAATCTGAGAAACCGCAATCTGTAGCTCCCAGTGGCTCCGGTCGCGGTCAGATCTGTACATAAACTGCAGCAGAACTCGTCTTGAATCTCCACATAGCACTGAAGTTGCACAGGGCAGGGCGCACAGCGCAGGGCTATGTGATTGGAAGGACCAAAGAAAGTCTACTCCCTTTCCAAACACCACCACTGTGGCACCCACCGCCATAATCTCCAGAATCCTGAGTCAACATATTGCTTCACAATATTTCACTCTTCCAAATCATCCATCACACTCCCAAGCAGAAGTGAAGAGAACTCCTTGCATTCTCAGTTAGCAATATACAGGAGAATCTGCACCCAGTACTGAGGCAGCTTTACACGGTTTCAGAGTTCTGCATTTCACCTTTCCAAAGATAGTTTCTCTTAAAATGATTAATTCAAAGTCTGACATCTGACGTCTTTTGTTATCCACACACACTTTGCACACCAGGTCTCTCTGGCCCAGAAATGGCAGGCGCTCTGGATTTGTAGTCAGGTAAGATAAAGACCAGGGTGCTGTGATGAAGGATGAGCTCTATCTCAGTTGTGCTGTAATGTGTTGGATTCTATGGGAGGTGCCGAATCATACAGTGTGTCCGTGTCGTGGGTCGGCTCACCGGCCAATGTGCAAGGATTGGACAATGTACCCGCGCCACAGTCACAAAAAAAACCTATCATGCCGTATAAACTCCACATCATGCCCTTGGTGGCACTTCTTAATACAATTCACACAAATTGCATTCCGGTCTGTTGTGTTACAGGTGTGACACCTAATAGAAAAGAATGGAACATAGTGAAATACTACAACCATTTATGTTGGTTTTCAAAGCAGACTGCTTCAAGTTGCCTGCCTTCTGATTACCTGTAGAAATCGTGCATGGGGTAGCTGGTGTAACTGGAAATCTTGTACAGGCACTGACCTCTGCTCACTGCTTTTTCTATGGCATCCTGATTGTTCATAATTTTATTATCTAGAAAGTTATGGAAAAGATTTATATTAACACACATACACATATTATTGAGGTAAAGTGAGAAAGATAGCTATGACTCTTAGATAATGTTTACCTTTCATTGTAACATTGACACCAGAGGCTAGAAATAAGCCTCCAAATCTGTTGTTGAATATTTGATTGCCTTCCAGCGTCGCTGTGGCATGGTTTGTGATTTCAATGCCTAAAGTGGGAGTCAGAGAGAGTGTTGTTTGGACGAAGTAATAGAAAAAAGGCACATAAACTACACACAAATTCCAATTCCAAGAACTCCAGAATGTCCAGTATGTGTTTCATTCATGATAATGGCACTTTCTTTTATTATTTCACAATTTAACGTTACTACACCAAAATAAGCATTACATCAGACTTAAGACCACCTCAGTGGCAGCATGTACGCACTTCTGACCTTAAACCTTCTACCGACCTGCAGCAAAGCCGTCAAATATCCGGTTCTTCCGCAGCACTGGGTGGCTGTTTGTGCTGATGAGAACACCAGCCTGTGCATTCCTGAAGATGTCATTCTCTTCCAACAACCCTGAATATGCATATGAAAACAGTGCTATTAGTTTCTATGGTAATGATTAAACATGGTACATCCATTATATTAATTGGGCGGCTTTTTTGACACAGATTAAGCTCAGTTTTGAATCACAAGGGCTTTCATTGGGGGATTAATCACTAATAGTGTGATTTAGCTCAAGACAGCCCTTGATCCATGTCTAGGGAATCTAGGGAATTTTTCTACTTCAAGTGTCCACCAGCTGGCATAGCATTTCCTGTACTGTGTTCATACGCAAAAAGAAATTATGCAATCCATTCTTACCCCTCCCACCGTTGAATATGCAAATACCCCCATCCCGTCCATCATGGATCTTATTCCTGCGCAGCGTGGGGTTGCTGTCTGTCTTAATCCACACCCCCGCCATGGCATTATCAAAGATCTCATTGTCCTCGATAAAA
>TU300691
GCCGGGGAAGCCATAATGGTATGGCTCTGCTTCTAATCTGAGAAACCGCAATCTGTAGCTCCCAGTGGCTCCGGTCGCGGTCAGATCTGTACATAAACTGCAGCAGAACTCGTCTTGAATCTCCACATAGCACTGAAGTTGCACAGGGCAGGGCGCACAGCGCAGGGCTATGTGATTGGAAGGACCAAAGAAAGTCTACTCCCTTTCCAAACACCACCACTGTGGCACCCACCGCCATAATCTCCAGAATCCTGAGTCAACATATTGCTTCACAATATTTCACTCTTCCAAATCATCCATCACACTCCCAAGCAGAAGTGAAGAGAACTCCTTGCATTCTCAGTTAGCAATATACAGGAGAATCTGCACCCAGTACTGAGGCAGCTTTACACGGTTTCAGAGTTCTGCATTTCACCTTTCCAAAGATAGTTTCTCTTAAAATGATTAATTCAAAGTCTGACATCTGACGTCTTTTGTTATCCACACACACTTTGCACACCAGGTCTCTCTGGCCCAGAAATGGCAGGCGCTCTGGATTTGTAGTCAGGTAAGATAAAGACCAGGGTGCTGTGATGAAGGATGAGCTCTATCTCAGTTGTGCTGTAATGTGTTGGATTCTATGGGAGGTGCCGAATCATACAGTGTGTCCGTGTCGTGGGTCGGCTCACCGGCCAATGTGCAAGGATTGGACAATGTACCCGCGCCACAGTCACAAAAAAAACCTATCATGCCGTATAAACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300687 False 2101 lncRNA 0.38 2 5070451 5073098
TU300686 False 2003 lncRNA 0.43 2 5071576 5074125
TU300691 True 742 lncRNA 0.48 2 5071576 5072864

Neighbor

gene id symbol gene type direction distance location
CI01000063_05034462_05041925 FSHR coding upstream 27132 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 81452 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 170460 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 179432 4877614 ~ 4891019 (+)
CI01000063_04807641_04810737 NA coding upstream 259263 4807294 ~ 4811188 (+)
CI01000063_05083449_05083858 NA coding downstream 9324 5083449 ~ 5084210 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 34811 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 109494 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 117194 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 149750 5223875 ~ 5227171 (+)
G265005 NA non-coding upstream 43072 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 46049 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 55865 5014349 ~ 5014586 (+)
G264946 NA non-coding upstream 197889 4758404 ~ 4872562 (+)
G264960 NA non-coding upstream 314330 4755714 ~ 4756121 (+)
G264945 NA non-coding downstream 10755 5084880 ~ 5085892 (+)
G265040 NA non-coding downstream 61766 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 62216 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 63478 5137603 ~ 5137907 (+)
G265049 NA non-coding downstream 71373 5145498 ~ 5145762 (+)
G262436 NA other upstream 2355934 2713615 ~ 2714517 (+)
G262423 NA other upstream 2827486 2241408 ~ 2242965 (+)
G262194 NA other upstream 3925444 1139352 ~ 1145007 (+)
G262060 NA other upstream 4359897 710110 ~ 710554 (+)
G261984 NA other upstream 4403069 665800 ~ 667382 (+)
G265391 NA other downstream 839658 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1261153 6335618 ~ 6338283 (+)

Expression


Co-expression Network