G264945



Basic Information


Item Value
gene id G264945
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5084880 ~ 5085892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU300664
TTACTCCGAGAGAGGATTTATAGCTACAGAATGCAAATAACCAGAAAAAAAAATACCTGAAAAGAAAGATAGTGCTAAAATGGAACATTCTTTTCTAATCTACTATAGATTATATCCTTATTTCCATTATACCATAAACGATTTTACAGAAATGTTGAACTTTCATCCACCAAGACAATGCTCAGCCTGAAGCCCTCAGGCTGAAGTCAGTTTGCCTTTGGAAGAACGTGACACTATCTCATTGACGAAGCTATTGTTTTGGCCGATGACCTCTGCCTTGAGTTTGCGCAGCTCCTCTTTGACAGCCTCATCAGACATGCCGTCAACAGGCATTGATTTAACCTTAGCCAGGAAAGCCTCAATGATCTTCTCCCCCTCCTGTTTCTCCAGGCAGCGTTTCTTGGCTTCAGGTCCAGCTTCCTCCCCGGCTTTGGAAATATCCTGGAACTCCTCAAGCTCCAAAGCCTTCTCCCGTGCATTAGCAATCACATGCTTGGGGAAGTTAGCAAGCTCTGCCACATGAATCCCAAAGCTCTGGTCACACACGCCTTTTTTCACCTTGTAGAGCATTGTGAGAGTGCTATCTGTGGTCAGGGCAGTGACGTGGAGGTTACGGACAGTGGGCACCTGCTGCGCCAGTGCCGTCAGCTCATGGAAGTGAGTGGCAAACAGGCAGAAGGACTTGAGGCGGGTAGCGATGTACTCTGAGATTGCCCAGGCCAGACCAAAGCCATCGTATGTGGATGTGCCTCTGCCCAGTTCATCAATAATGATGAGAGAATCCTC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU300664 True 786 lncRNA 0.47 3 5084880 5085892

Neighbor


gene id symbol gene type direction distance location
CI01000063_05083449_05083858 NA coding upstream 670 5083449 ~ 5084210 (+)
CI01000063_05034462_05041925 FSHR coding upstream 41561 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 95881 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 184889 4895763 ~ 4899991 (+)
CI01000063_04878276_04890999 NRXN1, NRXN1A coding upstream 193861 4877614 ~ 4891019 (+)
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding downstream 23044 5108936 ~ 5113069 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 97727 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 105427 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 137983 5223875 ~ 5227171 (+)
CI01000063_05271158_05276999 NA coding downstream 185266 5271158 ~ 5277105 (+)
G264948 NA non-coding upstream 10755 5070451 ~ 5074125 (+)
G265005 NA non-coding upstream 57501 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 60478 5024122 ~ 5024402 (+)
G264997 NA non-coding upstream 70294 5014349 ~ 5014586 (+)
G264946 NA non-coding upstream 212318 4758404 ~ 4872562 (+)
G265040 NA non-coding downstream 49999 5135891 ~ 5136247 (+)
G265041 NA non-coding downstream 50449 5136341 ~ 5136689 (+)
G265042 NA non-coding downstream 51711 5137603 ~ 5137907 (+)
G265049 NA non-coding downstream 59606 5145498 ~ 5145762 (+)
G265054 NA non-coding downstream 65039 5150931 ~ 5151217 (+)
G262436 NA other upstream 2370363 2713615 ~ 2714517 (+)
G262423 NA other upstream 2841915 2241408 ~ 2242965 (+)
G262194 NA other upstream 3939873 1139352 ~ 1145007 (+)
G262060 NA other upstream 4374326 710110 ~ 710554 (+)
G261984 NA other upstream 4417498 665800 ~ 667382 (+)
G265391 NA other downstream 827891 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1249386 6335618 ~ 6338283 (+)

Expression



Co-expression Network