Item | Value |
---|---|
gene id | G264945 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000063 |
NCBI id | null |
chromosome length | 7808773 |
location | 5084880 ~ 5085892 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU300664 | True | 786 | lncRNA | 0.47 | 3 | 5084880 | 5085892 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000063_05083449_05083858 | NA | coding | upstream | 670 | 5083449 ~ 5084210 (+) |
CI01000063_05034462_05041925 | FSHR | coding | upstream | 41561 | 5034462 ~ 5043319 (+) |
CI01000063_04927483_04988999 | NRXN1A, NRXN1 | coding | upstream | 95881 | 4927483 ~ 4988999 (+) |
CI01000063_04896882_04899387 | NA | coding | upstream | 184889 | 4895763 ~ 4899991 (+) |
CI01000063_04878276_04890999 | NRXN1, NRXN1A | coding | upstream | 193861 | 4877614 ~ 4891019 (+) |
CI01000063_05108936_05112439 | CALM, CALML6, CALM2, CALM3, CALM1 | coding | downstream | 23044 | 5108936 ~ 5113069 (+) |
CI01000063_05183819_05187667 | GCH2, GCH1 | coding | downstream | 97727 | 5183619 ~ 5188349 (+) |
CI01000063_05191319_05197432 | PIGF | coding | downstream | 105427 | 5191319 ~ 5197560 (+) |
CI01000063_05223875_05227171 | NA | coding | downstream | 137983 | 5223875 ~ 5227171 (+) |
CI01000063_05271158_05276999 | NA | coding | downstream | 185266 | 5271158 ~ 5277105 (+) |
G264948 | NA | non-coding | upstream | 10755 | 5070451 ~ 5074125 (+) |
G265005 | NA | non-coding | upstream | 57501 | 5027145 ~ 5027379 (+) |
G265004 | NA | non-coding | upstream | 60478 | 5024122 ~ 5024402 (+) |
G264997 | NA | non-coding | upstream | 70294 | 5014349 ~ 5014586 (+) |
G264946 | NA | non-coding | upstream | 212318 | 4758404 ~ 4872562 (+) |
G265040 | NA | non-coding | downstream | 49999 | 5135891 ~ 5136247 (+) |
G265041 | NA | non-coding | downstream | 50449 | 5136341 ~ 5136689 (+) |
G265042 | NA | non-coding | downstream | 51711 | 5137603 ~ 5137907 (+) |
G265049 | NA | non-coding | downstream | 59606 | 5145498 ~ 5145762 (+) |
G265054 | NA | non-coding | downstream | 65039 | 5150931 ~ 5151217 (+) |
G262436 | NA | other | upstream | 2370363 | 2713615 ~ 2714517 (+) |
G262423 | NA | other | upstream | 2841915 | 2241408 ~ 2242965 (+) |
G262194 | NA | other | upstream | 3939873 | 1139352 ~ 1145007 (+) |
G262060 | NA | other | upstream | 4374326 | 710110 ~ 710554 (+) |
G261984 | NA | other | upstream | 4417498 | 665800 ~ 667382 (+) |
G265391 | NA | other | downstream | 827891 | 5913783 ~ 5919029 (+) |
CI01000063_06335618_06338138 | HOXB8B | other | downstream | 1249386 | 6335618 ~ 6338283 (+) |