XLOC_010368


Basic Information

Item Value
gene id XLOC_010368
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1204142 ~ 1218570 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021776
AACGCAGCGGATGCTGCTCCATGTAAACAAACTGCACTCTCAAATAGGCGGAGTTAAATACAACAGTGAACGGAACAAAACGAGGGAATATAAACAAACTTCTGCCTCCAACAGCCTGATGTGACGTCTTCATTTATACaggCTCCTGTCGTTTCCTCCTCCTCAGACAGCTCCATGTCTTCAATATCTATGTTGTCCTTCTGCTGCTGAGCTCCATCTCCGGTCTGGCTCTGAAAAGGTGACTCGGATCCACTTGGTGATGGGGCGTCTGCAGAAGGAGACGGGAGCGGGGAGTCCTCCAGACGGGGCAGCGTCGCCTTCAAAGCATCCAGTTTACGCTTCAGGCTGCAGACGCGGTTGGCGAACGCTTTATACGCCTGCAGGAAGAATGTTCCAGAGAAGCACATTATAAGGATATTGGGACATACATTAGCCGTGTTTCCATACAAAgatatgcgcaaaactggaatacgGTATTAAAAAGGGTTTCCGCaagtttcatcaagtcaaatttaaagatgcaagtttgacacccagtggttgaactaggtattgcactcctggttcaaaacacatgcaagttgccagattgacgacatcaacaGGAGCGAGCCTGattatcaagcctaaaggctgatttaaaccttgttttaaataaaagcaatagaTAGAAGCAATATTGTGGCTGATTTTAAAAGGCCTCAGCCATCAGTCCGTCATTGCAGTGCTTCAATATAATTCTTCTTCTATTATTATTTCCACCAGAACGGTCTTGAGCTTGTATCTGCCCTCGCAAAGAGCGTCTCACTCCTCCAAAAGCCACCGCATTTAttgctttttgttgttgtctcATTTATTAGAGAAGAACAAACACTACAGTGGAGAATCCCAACACAGCAAAACTAGATTTTTCATTCACATATTTGCCGCCAGGATGCCAGGAAGtggcgattttgttctctttgctCCATCCCTGCTTTATTCACAATTATTCAACTCgccattattccagttttgcaagtctagtttgcatctttggatggaaaacTAGCTAGTGacttaacattattaaattaaataatataaacgtttctgtttaatcatttaatttcattcCTAAAATCTAGAAGAGCTGTTCCCAAAATGAAGGCATCAGAGTTGACTCACATTGGCAACAATTTTGACCTCTTTGTACTGAATCTCATAGAAGATG
>TCONS_00021777
GATAAAACGCAGCGGATGCTGCTCCATGTAAACAAACTGCACTCTCAAATAGGCGGAGTTAAATACAACAGTGAACGGAACAAAACGAGGGAATATAAACAAACTTCTGCCTCCAACAGCCTGATGTGACGTCTTCATTTATACaggCAGCTCCTGTCGTTTCCTCCTCCTCAGACAGCTCCATGTCTTCAATATCTATGTTGTCCTTCTGCTGCTGAGCTCCATCTCCGGTCTGGCTCTGAAAAGGTGACTCGGATCCACTTGGTGATGGGGCGTCTGCAGAAGGAGACGGGAGCGGGGAGTCCTCCAGACGGGGCAGCGTCGCCTTCAAAGCATCCAGTTTACGCTTCAGGCTGCAGACGCGGTTGGCGAACGCTTTATACGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021776 False 1213 lncRNA 0.42 2 1204142 1218565
TCONS_00021777 True 385 lncRNA 0.52 2 1204978 1218570

Neighbor

gene id symbol gene type direction distance location
XLOC_010367 irx2a coding downstream 640410 555746 ~ 563732 (-)
XLOC_010366 NA coding downstream 651515 551682 ~ 552627 (-)
XLOC_010365 irx4a coding downstream 820478 378766 ~ 383664 (-)
XLOC_010364 NA coding downstream 836998 354846 ~ 367144 (-)
XLOC_010363 NA coding downstream 850362 346263 ~ 353780 (-)
XLOC_010369 NA coding upstream 132401 1350971 ~ 1353006 (-)
XLOC_010370 sim1a coding upstream 247054 1465624 ~ 1503023 (-)
XLOC_010371 ascc3 coding upstream 285710 1504280 ~ 1757521 (-)
XLOC_010372 NA coding upstream 729455 1948025 ~ 1949069 (-)
XLOC_010373 hace1 coding upstream 1132950 2351520 ~ 2390931 (-)
XLOC_010626 CR392024.2 misc upstream 19676542 20895112 ~ 20895175 (-)
XLOC_010362 NA non-coding downstream 890589 302755 ~ 313553 (-)
XLOC_010359 NA non-coding downstream 964869 227820 ~ 239273 (-)
XLOC_010378 CU929110.1 non-coding upstream 1517106 2735676 ~ 2735799 (-)
XLOC_010380 NA non-coding upstream 1591147 2809717 ~ 2812008 (-)
XLOC_010384 NA non-coding upstream 2129436 3348006 ~ 3348709 (-)

Expression


Co-expression Network