G265041


Basic Information

Item Value
gene id G265041
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5136341 ~ 5136689 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300796
GCTGCTGTACCAAACAGACACATGGATGCACATATACCAGCAGGCGCTTGTTTACCAAAAGAAAGCGAGTGCCTCATGCAAATCAGCTGGGCACATTTTAACACACCTTTCAGGATGTCTATTATGTCTCATTTCTCAAGTTGGGCAGGATGCAAATCCTCCATTTGGATTTACAATATGGAAATCACCTAAGCCTGTGTTTAGTTGGATTGATTCTGCCCAGATTTGAGCACAGCTTGTGTATCGGCCTGTATTTCTGCACTGGGAGAGTGAATCACCACCCACTAGTAATCACCTCTGAATTCACGTACAGTCACAGTGTCCTTCCCGTGTTCTACACCCACACCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU300796 True 349 lncRNA 0.46 1 5136341 5136689

Neighbor

gene id symbol gene type direction distance location
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding upstream 23272 5108936 ~ 5113069 (+)
CI01000063_05083449_05083858 NA coding upstream 52131 5083449 ~ 5084210 (+)
CI01000063_05034462_05041925 FSHR coding upstream 93022 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 147342 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 236350 4895763 ~ 4899991 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 46930 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 54630 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 87186 5223875 ~ 5227171 (+)
CI01000063_05271158_05276999 NA coding downstream 134469 5271158 ~ 5277105 (+)
CI01000063_05281800_05302429 NA coding downstream 143966 5280655 ~ 5302499 (+)
G265040 NA non-coding upstream 94 5135891 ~ 5136247 (+)
G264945 NA non-coding upstream 50449 5084880 ~ 5085892 (+)
G264948 NA non-coding upstream 62216 5070451 ~ 5074125 (+)
G265005 NA non-coding upstream 108962 5027145 ~ 5027379 (+)
G265004 NA non-coding upstream 111939 5024122 ~ 5024402 (+)
G265042 NA non-coding downstream 914 5137603 ~ 5137907 (+)
G265049 NA non-coding downstream 8809 5145498 ~ 5145762 (+)
G265054 NA non-coding downstream 14242 5150931 ~ 5151217 (+)
G265055 NA non-coding downstream 15355 5152044 ~ 5152315 (+)
G265056 NA non-coding downstream 15724 5152413 ~ 5152793 (+)
G262436 NA other upstream 2421824 2713615 ~ 2714517 (+)
G262423 NA other upstream 2893376 2241408 ~ 2242965 (+)
G262194 NA other upstream 3991334 1139352 ~ 1145007 (+)
G262060 NA other upstream 4425787 710110 ~ 710554 (+)
G261984 NA other upstream 4468959 665800 ~ 667382 (+)
G265391 NA other downstream 777094 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1198589 6335618 ~ 6338283 (+)

Expression


Co-expression Network