XLOC_010369


Basic Information

Item Value
gene id XLOC_010369
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1350971 ~ 1353006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022074
CAGGAAGTAGAGCCGCATTAAACTGCCCTGCTCTCTAAATACAGCGTGAAGCTCtgcatgttttacattttttggcaTTATCCCTATCTCAAGATCTGCAGGCGACTGAGCGAAACATAAGAGGTATGTTAACGGGAGAGTACTGTATGTTAAAGCACCTagctaataaaataaacactcgCTTTAAGGGATTGCGGATGATTAGCATTGCATCATTTCTGATACTGAACCTGTCAGTAGTTCTTAATGTAAACAGAAGTATTGGTCTTAACCAATGTAATCACACGTGTAATATCTTCCTCTGTAGGTTTATTTGTTGAAGCTAAGCTTATGTGTTTGAGTTTAATAATGCATGCTAATGTATCATCATGCTAATAGTATACATTAATGTATACAGTATAATTAACATTAGTTGTTACTAGTGTTAGACTAAACAAACATGATCACATGTGCAACACTTCACTTTATGTTCATCGTTTATTCAAGCTAAGCTAATGTGTTTACGTTTAACAATGCATGCTAATTTACTGTCATGCTAATAGTTTGTTTATATAATATTTCCTGTAatgctggtggtggtgtttaTTTTGAATGAGCTCTTTTTTTAGCCTTCAGTCAGCTTCTGTTTagttttccctgctgaaaaatccagcttaaaccagcctaggctggttggctggttttaggtggtgaaccaggctggttttagaggggttttggccacttccaggatggtttccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaactagcttgaccagcctagccaagctgggagcccagccaaaaccagctatttccagcttaaaccaggctggacaagctggttttagctggatttggctggtcattttccagcctgaccagctaagaccaggctggaattggctggaaaccagcctggaaaaagccaaaacccctctaaaaccaccctggtcaaccagctgaaaccagccaaccagtctaggctggattaagctggatttttcagcagggttggttGAGTTCTTGAGAGATGTCTGCTCTTTATCCTGTGATGATAACACACAGTTAATTTAAGGTGTCTTTATGTCATGTATTAGAGCGTGCTGCGGCTCGTCCTGACGGCTCGTCCCGTCTTTAGAAGAGCTTCATCATGGATGCCATCAAACATGTGGCTGCCCTATTACTTGCACTCCTGTCCACTGCAGGTAGGACAATTCTTACTGTATATAAGATTATTATGTGGTGTCAAGGTGGCTCAATGGTTTGCATtgtggcctcacaacaagaaggtcactggttcgagtcctggctgggtcagtctgcatttctgtgtggagtttgcatgttttccccgtgttggggTGTGTTTCCTTCGGGTGATCCggttttccctcacagtccaaacacatgcgccataggggaattgatgaactggccgtagtgtatgagtgtgtgtgtgtgaataagtgtgtatgggtgtttcccagtactgggttgcggctggaaaggcatctactgtgtaaaacatatgctggataacttagcggttcattccactgcggtgacccctcataaataaaggactaagctgaagaatgtaaaataaatgtttggatTTTACAGTAAAGGACTGTATTTCATGCATTTATACACCAATACATCATATGGATTGTTGTTTACAGTATGCATCGGTCAATCGCGCTTCTCGTCTGTCTGTTCAGTTCCAGGGGTCAGCCAGGGTCGTCGCTCAGACTTTGTCTTGCTGAAGGACTCATATATTTTCCCCTATAACGCCAGCATCTGCGATCACGCCAGGTGGAGTAAGAGTTTCCCTACAGATGCATCGATCGGCAGATACAGAAACCAGCTCTGCTCAATTGAATATAATTTTGGAGCAGATTTCAGCTGTGTTGGAAACTAGCTGCTCCTCAAAGAGGCAAAAAGCACTGATCGGGGCACCTATGTGTTTATCTGTAATGAGGCAGAAAGTCAACTTAAACTCAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022074 True 2036 lncRNA 0.43 1 1350971 1353006

Neighbor

gene id symbol gene type direction distance location
XLOC_010368 NA coding downstream 132401 1204142 ~ 1218570 (-)
XLOC_010367 irx2a coding downstream 787239 555746 ~ 563732 (-)
XLOC_010366 NA coding downstream 798344 551682 ~ 552627 (-)
XLOC_010365 irx4a coding downstream 967307 378766 ~ 383664 (-)
XLOC_010364 NA coding downstream 983827 354846 ~ 367144 (-)
XLOC_010370 sim1a coding upstream 112618 1465624 ~ 1503023 (-)
XLOC_010371 ascc3 coding upstream 151274 1504280 ~ 1757521 (-)
XLOC_010372 NA coding upstream 595019 1948025 ~ 1949069 (-)
XLOC_010373 hace1 coding upstream 998514 2351520 ~ 2390931 (-)
XLOC_010374 hpxb coding upstream 1041187 2394193 ~ 2414063 (-)
XLOC_010626 CR392024.2 misc upstream 19542106 20895112 ~ 20895175 (-)
XLOC_010363 NA non-coding downstream 997191 346263 ~ 353780 (-)
XLOC_010362 NA non-coding downstream 1037418 302755 ~ 313553 (-)
XLOC_010378 CU929110.1 non-coding upstream 1382670 2735676 ~ 2735799 (-)
XLOC_010380 NA non-coding upstream 1456711 2809717 ~ 2812008 (-)
XLOC_010384 NA non-coding upstream 1995000 3348006 ~ 3348709 (-)
XLOC_010386 NA non-coding upstream 2431868 3784874 ~ 3796633 (-)

Expression


Co-expression Network