G265046


Basic Information

Item Value
gene id G265046
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5155129 ~ 5159416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU300804
TACACATACAACACTTTTATTTTTGAATATTAAGACAATGAAGCATAAGCCAAGAGCACCAAGAGTGACAGCTACTGGTGAAAGAGGGGCATGTGGAGCCCCCCCACCCCCAAAAACAGCAAACTGTAACCCAAAGTCAAACAAAATAATACAACAGAGCAACTTAGTAACAGCCTGGGAGTAGGGACCATTAACTGTACATAAGAGAGAATGAAGGAAAGGTAAGATAAAGGACATTGAGTGCGAGTAATTACATTGTACAGTACAAACCTTGGGCAGTGTATAAAAAAAAAATTAAAACATATAAGATGGTGAGAGACAGTGATATCCACCTCACTCCACAGAACCCATGGTGTATGTTTCAGCAAGTGTTTTGAGGGGCTAGTCCCAAGGGTCCAATCAGAAATACGGAGGCAGGTCATGGGTGGCGCAATAGTCATCTTAAGTGTAATCATTGTCAAGTGTTGTCATCATGGCACCCAGTTCTAAACCTCACCTTCAGCCCATTCGAACCTTAAGGTAACACAGTTACCATGGTGATGCTTGTGACTTATTCAATCTGAAACAGATCCAACAAAATTTAATACAAGTCAGTCTTTTATTTCTGTCTAAACATTGCTGAACACAACCTCCCTTTGTGTACAGAAACGTATCAAATAATATTGAACAGAAAACTTTTCCTGTTGGTAATGTGCAAGGCTCTGCACATAAAATGGCTTGCAACATTCTCTCTAACATTTTAACATAGTATTGTTATTTTCTAGAAGAAATTCCGGCTAGGCTATTGACAGGTGTATATCTTGTGAGGACACACACTGCCAATCTAAGCCTCAGTATCATATCTGAGAATCATGACCTTTCATCTTGCTTTGTGGTGATCTGTGATGAAGTCTCCATCTATGCACATTTTTATGTGCTGACCGATCACTTGAGTCAATCATACACCTGATGGTGTATAAATATTTAATAATCACATTTAACTATACTGTTCTGGTGAACAGATAAACAGCAAATCCAGACCTTAACAACTTGGGATACTAAAATATGGGGGAATAAAACCTTTTTGTTCACAAATTCTTCGAACTTCCTTTCAGCACACAATAACACACTTGTATAAAAAACATAACTAATGAATACGGTTATGTCGCATTTTGCTTTAATTTGCTGCAGGATGCAAATTAACCAGACTGGGGACAACTGAATTTGGGTTTCTTGAGGAAAGGGGGAAGTATTTACGAAAAGGCACTTCTGAAAGTTAATCCATAGAGTAAGCCAATGAGCACCTTTAGGGTCTAAAACTAGGCCTTTTTTTTAAACTTCAAAATGTTTATTTTGGAACATTTTAGCAATAATTTTGTGAGAATCACATTGACGATTTTTCACCAAACTTAAACCTTTGGTCACATTTATCTATAGTTTCTCTCACACACTTTTATGACACACTGCACCAACATCCTATGTTGTCGTGATGTGAATAGAATGATTCTAACCTGAAGACAATTTCAATGGAGAACTATTTCTCAGACAATTCACATCAGTTTTCACATGGGTCACCATTATAGCTAAGCCCAAGAACATTATTGCATTTCTTTACAGTTACTAATAATAAAAATATTTTATTTTAAAAATCTGTATATTATATTATATATATATATATATTATATATATATATATATATATTAATCCATTATGCCTTTAGTAAAACTAGGGAAAACTAGGGGGGAGAGAAGAGGCATCATGATCCTCTGCTCTGCCCCCATCTGACTGAGCAAATGCTCCACCCCTGATGAAAATTGGTACACACAGGTATAGGTAGGTACACGTCAAGTTTCACGGGTTAGTGCAGTGAGGAGTGTCTGGAGCAAAGCCAAGCATGACACTTTTACAGGTGAGCAGTAAGCAGGACAGCTGGCCCCTTCAGATGCCATGTCAACCTGAAACCTGCTTCACAACCATCATACAAGCCGAGGCTCTGTCTAAATTGCACTAATTTCACCCACACCCTACAGAGAGAGAGAGGTGGTGAGGGAGATCAAACCACACAGTGGTTGCAGTGATGTCACCCCAAAGTTCTCTCCTCATGTCTTTGAATTCTTCCCAGGATGATCCTGACATCCTTTCTTGTGCAAGGAAAAAGACTCGACAGGATAACGTGCAGGAAGACGACTTTAAATGCATCAGGATAGACTGTGGATTAATGTTGCCCGGGAGGAGCGTATAACAAAACTTTTCAAGTCAGCAAAAGTCTCTTACGGTTGACTGAGGTCAGGGTCAGTGCAACACACACATACACACACACAAGCACACAAAGCTGGTTATAGTTGCACTGTATACCCTGCTGTTTAGGTGTTGTGAGCCTGAGCTTAGCATTTGGCAGTTCTACCTGATCGCATCAATTGAAAACAAGTCAGAAAGATGTAAGAATCAATAGTAATATCCCTAGCAGTATTCAAAACACATCACACATCAGCACCAGGCCCATGAAAAGGATGTCTCACGGTGCCACTGACACTCAGTGTAGGAAAGGTCATTGGAAAACATGTCTTTTCCAATTAGACCACTGTTAGTAACAAATCCACTGAATGCACCATATGATGAACTTAATGGTTTAGATGTATGCACACTGCTTAAGTCAATGGTTCCCAATCTCGGTCCTGGCACCCCCGCCCCCCAACCCCGCACATTTTGTATGTCTCTCTTCTATGGGGAGGGGGCACCAGGACCAGGAATCGCTGGCTTAAATGTGATTTAATCTTTTTTGAGACTAAACAAATGGGGTAAACAGCACAAGAGTTATACATATGTCCTTTTCTCTTAACTTCTATTTGAAATCCCTCATTGTAGTTACAGAAATTCAAGTGTGGATGTGACTGATTCTAAAGTGATCAATAAGCTGGTCTTGGCCTACTCTTAGCCAACAATGTGATTATACTCCATTTATTTAAATTCCAAACCTTCCTCCTAGTTGCTTAACAAAAGAATCTGCTAAACTTAAATGTACTAAAGATTATTCATCAATTATTAAAATCATTTAAATTAAGCAGGTCTCATAAAACAAGCCACCTTGACCCAATTCCAGTGGCACTGATGGGGTCACCTCAAAACTTACTATTTCCTGTTTAGAGCAATGTGGGTTAGACAAAGTGAGTGTAGAGTGTTTATTCCTGTATATAGGAGGGTGTTTATGCCTAACAACAATGGTCCCAGTGTAGCAGGTTTATGTATTGCCTTTGCTGCACCCACTAACATAAGCACAGTTAAGTTAAAGTGCTCTTAATCAGTGCCCAAATTCAAGGGCACTAATAGACCATTCACAACAATACAAAAAAGACGATACAGAATTAGTCACCCCCCCTGTGCAATTAGTGGTAGGAATTAATGATTACAAAACATATTGACAGCAACAGAACGCAGAGTGTGAGTAACAATGTTTTTTGAAAACCAAGCGCTCTCACACACATCATCACCACATCATGTTGTCGTCCTTAATCGCTTCCCAGAAGCGTAAGGAAGCAGAACATTACAGAGCCCTTCTCTCCACTGCAACGCATTCCCAAAAGCTGTCTAGATACAGTTTAAGGTCAATCCATCTTTCATGGACCTCTCTGCCTCATTCTCTATGAGCAGGGTAAAAGCCTTTCTATTTCCTGCTCCAGAATGCCTCTTCGAACCATGGAATGAGCACAGAATGTTACCATGGGAACCACTGACAGAGCACCATGAAAGCTAAAGATGATGAAAGAAGCTGGAAAAAGCAATATTTGAAAATCACCCTTCATTTCCCCTCCCCTACTTTGAATAAACACTAACAATGCAATTTTAATGCAAGGGAATTAAGGGCAGGCAGGGAGGTGAACTGAAATGGCATAAACCTCACAGTCAAGCAGTGAAAAATATCTGCAGATCCCCCTTAGGGCAAAGCCATGGGAAGTAGAGTTGTCAAATGTACCGACTTCGGTACCAATCGGTACCGAAATTTTAAAAATGTGAAGCTTTGAGCGGATTCG
>TU300805
TACACATACAACACTTTTATTTTTGAATATTAAGACAATGAAGCATAAGCCAAGAGCACCAAGAGTGACAGCTACTGGTGAAAGAGGGGCATGTGGAGCCCCCCCACCCCCAAAAACAGCAAACTGTAACCCAAAGTCAAACAAAATAATACAACAGAGCAACTTAGTAACAGCCTGGGAGTAGGGACCATTAACTGTACATAAGAGAGAATGAAGGAAAGGTAAGATAAAGGACATTGAGTGCGAGTAATTACATTGTACAGTACAAACCTTGGGCAGTGTATAAAAAAAAAATTAAAACATATAAGATGGTGAGAGACAGTGATATCCACCTCACTCCACAGAACCCATGGTGTATGTTTCAGCAAGTGTTTTGAGGGGCTAGTCCCAAGGGTCCAATCAGAAATACGGAGGCAGGTCATGGGTGGCGCAATAGTCATCTTAAGTGTAATCATTGTCAAGTGTTGTCATCATGGCACCCAGTTCTAAACCTCACCTTCAGCCCATTCGAACCTTAAGGTAACACAGTTACCATGGTGATGCTTGTGACTTATTCAATCTGAAACAGATCCAACAAAATTTAATACAAGTCAGTCTTTTATTTCTGTCTAAACATTGCTGAACACAACCTCCCTTTGTGTACAGAAACGTATCAAATAATATTGAACAGAAAACTTTTCCTGTTGGTAATGTGCAAGGCTCTGCACATAAAATGGCTTGCAACATTCTCTCTAACATTTTAACATAGTATTGTTATTTTCTAGAAGAAATTCCGGCTAGGCTATTGACAGGTGTATATCTTGTGAGGACACACACTGCCAATCTAAGCCTCAGTATCATATCTGAGAATCATGACCTTTCATCTTGCTTTGTGGTGATCTGTGATGAAGTCTCCATCTATGCACATTTTTATGTGCTGACCGATCACTTGAGTCAATCATACACCTGATGGTGTATAAATATTTAATAATCACATTTAACTATACTGTTCTGGTGAACAGATAAACAGCAAATCCAGACCTTAACAACTTGGGATACTAAAATATGGGGGAATAAAACCTTTTTGTTCACAAATTCTTCGAACTTCCTTTCAGCACACAATAACACACTTGTATAAAAAACATAACTAATGAATACGGTTATGTCGCATTTTGCTTTAATTTGCTGCAGGATGCAAATTAACCAGACTGGGGACAACTGAATTTGGGTTTCTTGAGGAAAGGGGGAAGTATTTACGAAAAGGCACTTCTGAAAGTTAATCCATAGAGTAAGCCAATGAGCACCTTTAGGGTCTAAAACTAGGCCTTTTTTTTAAACTTCAAAATGTTTATTTTGGAACATTTTAGCAATAATTTTGTGAGAATCACATTGACGATTTTTCACCAAACTTAAACCTTTGGTCACATTTATCTATAGTTTCTCTCACACACTTTTATGACACACTGCACCAACATCCTATGTTGTCGTGATGTGAATAGAATGATTCTAACCTGAAGACAATTTCAATGGAGAACTATTTCTCAGACAATTCACATCAGTTTTCACATGGGTCACCATTATAGCTAAGCCCAAGAACATTATTGCATTTCTTTACAGTTACTAATAATAAAAATATTTTATTTTAAAAATCTGTATATTATATTATATATATATATATATTATATATATATATATATATATATATATATATTAATCCATTATGCCTTTAGTAAAACTAGGGAAAACTAGGGGGGAGAGAAGAGGCATCATGATCCTCTGCTCTGCCCCCATCTGACTGAGCAAATGCTCCACCCCTGATGAAAATTGGTACACACAGGTATAGGTAGGTACACGTCAAGTTTCACGGGTTAGTGCAGTGAGGAGTGTCTGGAGCAAAGCCAAGCATGACACTTTTACAGGTGAGCAGTAAGCAGGACAGCTGGCCCCTTCAGATGCCATGTCAACCTGAAACCTGCTTCACAACCATCATACAAGCCGAGGCTCTGTCTAAATTGCACTAATTTCACCCACACCCTACAGAGAGAGAGAGGTGGTGAGGGAGATCAAACCACACAGTGGTTGCAGTGATGTCACCCCAAAGTTCTCTCCTCATGTCTTTGAATTCTTCCCAGGATGATCCTGACATCCTTTCTTGTGCAAGGAAAAAGACTCGACAGGATAACGTGCAGGAAGACGACTTTAAATGCATCAGGATAGACTGTGGATTAATGTTGCCCGGGAGGAGCGTATAACAAAACTTTTCAAGTCAGCAAAAGTCTCTTACGGTTGACTGAGGTCAGGGTCAGTGCAACACACACATACACACACACAAGCACACAAAGCTGGTTATAGTTGCACTGTATACCCTGCTGTTTAGGTGTTGTGAGCCTGAGCTTAGCATTTGGCAGTTCTACCTGATCGCATCAATTGAAAACAAGTCAGAAAGATGTAAGAATCAATAGTAATATCCCTAGCAGTATTCAAAACACATCACACATCAGCACCAGGCCCATGAAAAGGATGTCTCACGGTGCCACTGACACTCAGTGTAGGAAAGGTCATTGGAAAACATGTCTTTTCCAATTAGACCACTGTTAGTAACAAATCCACTGAATGCACCATATGATGAACTTAATGGTTTAGATGTATGCACACTGCTTAAGTCAATGGTTCCCAATCTCGGTCCTGGCACCCCCGCCCCCCAACCCCGCACATTTTGTATGTCTCTCTTCTATGGGGAGGGGGCACCAGGACCAGGAATCGCTGGCTTAAATGTGATTTAATCTTTTTTGAGACTAAACAAATGGGGTAAACAGCACAAGAGTTATACATATGTCCTTTTCTCTTAACTTCTATTTGAAATCCCTCATTGTAGTTACAGAAATTCAAGTGTGGATGTGACTGATTCTAAAGTGATCAATAAGCTGGTCTTGGCCTACTCTTAGCCAACAATGTGATTATACTCCATTTATTTAAATTCCAAACCTTCCTCCTAGTTGCTTAACAAAAGAATCTGCTAAACTTAAATGTACTAAAGATTATTCATCAATTATTAAAATCATTTAAATTAAGCAGGTCTCATAAAACAAGCCACCTTGACCCAATTCCAGTGGCACTGATGGGGTCACCTCAAAACTTACTATTTCCTGTTTAGAGCAATGTGGGTTAGACAAAGTGAGTGTAGAGTGTTTATTCCTGTATATAGGAGGGTGTTTATGCCTAACAACAATGGTCCCAGTGTAGCAGGTTTATGTATTGCCTTTGCTGCACCCACTAACATAAGCACAGTTAAGTTAAAGTGCTCTTAATCAGTGCCCAAATTCAAGGGCACTAATAGACCATTCACAACAATACAAAAAAGACGATACAGAATTAGTCACCCCCCCTGTGCAATTAGTGGTAGGAATTAATGATTACAAAACATATTGACAGCAACAGAACGCAGAGTGTGAGTAACAATGTTTTTTGAAAACCAAGCGCTCTCACACACATCATCACCACATCATGTTGTCGTCCTTAATCGCTTCCCAGAAGCGTAAGGAAGCAGAACATTACAGAGCCCTTCTCTCCACTGCAACGCATTCCCAAAAGCTGTCTAGATACAGTTTAAGGTCAATCCATCTTTCATGGACCTCTCTGCCTCATTCTCTATGAGCAGGGTAAAAGCCTTTCTATTTCCTGCTCCAGAATGCCTCTTCGAACCATGGAATGAGCACAGAATGTTACCATGGGAACCACTGACAGAGCACCATGAAAGCTAAAGATGATGAAAGAAGCTGGAAAAAGCAATATTTGAAAATCACCCTTCATTTCCCCTCCCCTACTTTGAATAAACACTAACAATGCAATTTTAATGCAAGGGAATTAAGGGCAGGCAGGGAGGTGAACTGAAATGGCATAAACCTCACAGTCAAGCAGTGAAAAATATCTGCAGATCCCCCTTAGGGCAAAGCCATGGGAAGTAGAGTTGTCAAATGTACCGACTTCGGTACCAATCGGTACCGAAATTTTAAAAATGTGAAGCTTTGAGCGGATTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300804 False 4007 lncRNA 0.40 2 5155129 5159416
TU300805 True 4017 lncRNA 0.40 2 5155129 5159416

Neighbor

gene id symbol gene type direction distance location
CI01000063_05108936_05112439 CALM, CALML6, CALM2, CALM3, CALM1 coding upstream 42060 5108936 ~ 5113069 (+)
CI01000063_05083449_05083858 NA coding upstream 70919 5083449 ~ 5084210 (+)
CI01000063_05034462_05041925 FSHR coding upstream 111810 5034462 ~ 5043319 (+)
CI01000063_04927483_04988999 NRXN1A, NRXN1 coding upstream 166130 4927483 ~ 4988999 (+)
CI01000063_04896882_04899387 NA coding upstream 255138 4895763 ~ 4899991 (+)
CI01000063_05183819_05187667 GCH2, GCH1 coding downstream 24203 5183619 ~ 5188349 (+)
CI01000063_05191319_05197432 PIGF coding downstream 31903 5191319 ~ 5197560 (+)
CI01000063_05223875_05227171 NA coding downstream 64459 5223875 ~ 5227171 (+)
CI01000063_05271158_05276999 NA coding downstream 111742 5271158 ~ 5277105 (+)
CI01000063_05281800_05302429 NA coding downstream 121239 5280655 ~ 5302499 (+)
G265059 NA non-coding upstream 412 5154191 ~ 5154717 (+)
G265058 NA non-coding upstream 955 5153835 ~ 5154174 (+)
G265057 NA non-coding upstream 1670 5153152 ~ 5153459 (+)
G265056 NA non-coding upstream 2336 5152413 ~ 5152793 (+)
G265055 NA non-coding upstream 2814 5152044 ~ 5152315 (+)
G265096 NA non-coding downstream 148529 5307945 ~ 5308294 (+)
G265104 NA non-coding downstream 154813 5314229 ~ 5314511 (+)
G265109 NA non-coding downstream 160216 5319632 ~ 5319863 (+)
G265114 NA non-coding downstream 166587 5326003 ~ 5326336 (+)
G265126 NA non-coding downstream 182798 5342214 ~ 5342446 (+)
G262436 NA other upstream 2440612 2713615 ~ 2714517 (+)
G262423 NA other upstream 2912164 2241408 ~ 2242965 (+)
G262194 NA other upstream 4010122 1139352 ~ 1145007 (+)
G262060 NA other upstream 4444575 710110 ~ 710554 (+)
G261984 NA other upstream 4487747 665800 ~ 667382 (+)
G265391 NA other downstream 754367 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 1175862 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G234069 NA non-coding NC_048567.1 CM023221.2 20914147 ~ 20915906 (-)
rainbow trout (Oncorhynchus mykiss) G1834504 NA non-coding NC_048587.1 CM023241.2 15750260 ~ 15752584 (+)
eurasian perch (Perca fluviatilis) G197053 NA unknown NC_053130.1 CM020927.1 26663159 ~ 26663785 (+)