Gene
RNA
| Item | Value |
|---|---|
| gene id | G265693 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 5326132 ~ 5329568 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU301566 | True | 3437 | lncRNA | 0.45 | 1 | 5326132 | 5329568 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000063_05304502_05306803 | HCAR1-4 | coding | downstream | 19329 | 5304439 ~ 5306803 (-) |
| CI01000063_05257128_05262520 | KCNG3 | coding | downstream | 62801 | 5256958 ~ 5263331 (-) |
| CI01000063_05252331_05253850 | COX7A3 | coding | downstream | 72282 | 5250005 ~ 5253940 (-) |
| CI01000063_05248902_05250362 | NA | coding | downstream | 75507 | 5248697 ~ 5250625 (-) |
| CI01000063_05198199_05217488 | RHOQ | coding | downstream | 108488 | 5198166 ~ 5217644 (-) |
| CI01000063_05353701_05355458 | ZFP36L2 | coding | upstream | 23190 | 5352758 ~ 5356284 (-) |
| CI01000063_05473346_05474995 | SIX2B, SIX2A, SIX2 | coding | upstream | 143770 | 5473338 ~ 5475757 (-) |
| CI01000063_05616519_05617045 | NA | coding | upstream | 286238 | 5615806 ~ 5617112 (-) |
| CI01000063_05627849_05635031 | SNCGB, SNCG, SNCA | coding | upstream | 298190 | 5627758 ~ 5635031 (-) |
| CI01000063_05652987_05657351 | BMPR1AB, BMPR1A, BMPR1AA | coding | upstream | 322708 | 5652276 ~ 5657351 (-) |
| G265665 | NA | non-coding | downstream | 44285 | 5264492 ~ 5281847 (-) |
| G265672 | NA | non-coding | downstream | 61789 | 5264142 ~ 5264343 (-) |
| G265653 | NA | non-coding | downstream | 99290 | 5221736 ~ 5226842 (-) |
| G265635 | NA | non-coding | downstream | 200649 | 5125257 ~ 5125483 (-) |
| G265564 | NA | non-coding | downstream | 213028 | 5109364 ~ 5113104 (-) |
| G265705 | NA | non-coding | upstream | 20298 | 5349866 ~ 5350103 (-) |
| G265709 | NA | non-coding | upstream | 31190 | 5360758 ~ 5365398 (-) |
| G265714 | NA | non-coding | upstream | 47176 | 5376744 ~ 5376976 (-) |
| G265732 | NA | non-coding | upstream | 83859 | 5413427 ~ 5413867 (-) |
| G265733 | NA | non-coding | upstream | 84862 | 5414430 ~ 5414668 (-) |
| G265567 | NA | other | downstream | 72192 | 5183279 ~ 5183287 (-) |
| CI01000063_05189361_05189645 | CRIPT | other | downstream | 135515 | 5188403 ~ 5189645 (-) |
| CI01000063_02725759_02726399 | NA | other | downstream | 2599597 | 2725759 ~ 2726535 (-) |
| CI01000063_02326799_02327290 | CBY1 | other | downstream | 2998413 | 2326741 ~ 2327309 (-) |
| CI01000063_02177769_02178239 | NA | other | downstream | 3147796 | 2177747 ~ 2178395 (-) |
| G265976 | NA | other | upstream | 958590 | 6283058 ~ 6290946 (-) |
| G266797 | NA | other | upstream | 1959927 | 7289495 ~ 7290224 (-) |
| G266660 | NA | other | upstream | 2109517 | 7439085 ~ 7441435 (-) |
