G265709


Basic Information

Item Value
gene id G265709
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5360758 ~ 5365398 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301594
CTACACTAACCCTACCACTAAACCCATCAAAGGAAACTTTTGCCATTTTTTTAATATCAAAATGTTTTTAAAGCCATTCGTTTACGACGTTTTAATAATACCCATGTCATTATACACTTTTGGGCCCTCGCGCACACACACACACACACACTTTGATGTAAAAAGTGCCATACTGCCCTCTGGTGACCGATATAATATTGGCATGCAGATAACAGAATCAAAGATGTAATATTTTGATTAAAATTAATAATACATTCAAACTCTACCTGGAACATTGACCTTTATATTTTTAATTTTGACAATACTAGGGTTAACTTGCCAAATTTTAGCTGTGGATATGTAGCGTGTCTGGACCGGTCACTCTCTCTCACACACACAAGGACCACACGACCACTTGATGAGATTCAGCACTGTAATTAAGGGAAATAATCAGTGGAGCAACGGGGCGACAGCTTCTCCCACTCTGGTACACACAGGATATTTTTTTTTTGGGGAGAAGCGAAAATCATATGCGTCATCGGCCTCATACACAACTAGACTGAGGCAATCGCATGTCGTGCAAGAGGAAACTCCGCAGGTGTGTTCCACTGACAACGTTCCCTTCCCAACAAATTCCCAAAGAAAAGTTCCGCTACTTTAGCGTTGTTTTCACATAACTTGTGAGCGATAATATAGGAACAAAATTTCGTGAAGTTCACT
>TU301588
GGAGCTAGTGTAAATAGCGTTTGCCAACAAGGGACGCTATTTGCACTTAGTGTAAATAGACACTCCGAAAAAGGCAATGATTTTACGATACTGTTCAGTTTATTTAAAATCATTTTCATTTAATACCACTGTATTAGGTTTCTCATTCAAACACAAATGCATTGTGTTAAACTGACTTGAAACAGTTGCGTTTTGGCACAACTCAATATTTTCATTTTGAAAGACCATGTTTCAATTAAGTAAGCCAAAAATAACATTTGATGCTTGTTCAATTTACTTAAGTAAATTAAGTTAACCCAACACGATTCTTTTCAATCACTTTATTTAATCCATTTGAGTTGAGAGTACATAAATGATTTTAGTTGTGTTAAAATAGCATTATAGAAACTAGGAACAGGATTTCCCCTTCCGATCATGCTTTGCACAGGGCTGGATAGGGAGAGTAAATATTAAAATAAAATGTTATGAAATAAAGTGTTGTTAATGTTTAATGTTCTTTTATGCTTGTATTTAAAAGAGTTTCTGGAATGTTAGTGTTTTTGGAGGTTACCATTGTGGTGAAGTGTTAGACCATGTGCTTGGGGTGAGGACCTGCTAACAACAATTAAAGTTGTTTTAATAATAAAAACAACTACTTTGGGCATGCCATGGATATAACAAAACCACCTAACAATAAGAGTCTTTACAGAGTAAAGGTTTTGTAAAAGGTTTTCTTGTTAGATAACATTTGTAAAGGTTGTAAAAATAGTTCTTGAACACATTCACTAAATAAAATAATCAATTAAACTGGATTACTTGTTTTAATTTTTGTTTGATATTAATTTTAGGATTATTAAACTTAATCGTTTTGGACAAAATTAAGAATGTTAACCTGACTAAATGGCATTGAATTAACCTTATGTAATATACTGAAATACACAATGTTAATTAAATGTAGTAACAACCCAGTTACGTGGAACCTGTTGACATAAAAAAGTTAAGTAAATTCAATGTATAATTTTTTTTTAGTGTATTTCTTTAAACTGGGTTAGATGCCAGTGGCTGTGAAGGAAAACGGTCTGGCACTGTGCAAACCCCCTATAATCCAACAAGCATAAATATACACATATAGACCACACACGCATAAACGCATCACTACCCTCCATCACTACTCTCCGAGCACACCATCCCCTCTCGCAGCTATGAATATTGAAGCGAAACACTAATAACAACATGTTTGCATTGTTGCGACTGCTCGGTCTGAATTATTTACTGGTGGACTCTTAATGTGACCACGTTGGGCTACAGACCAGCGCACAGCCTTTCCCTCAGTCAGCTCCGCTCTGCCATGTCACCTTGACCGTGTCACTACAGCTTAGGCGCAGACGGGGGTCAGAGTTCACTCTGCCAGGTTGCGTGAGTTTGCGAGGAGGTGAGGTCCAATCAAGCATGAGACAGCTTTTCACTTCCAGTGTCCGTTAGGGTGCCTCGGCCAACCAGCTCCCTCGCCCTGCACATTAATCCACTCAGCAGCATTAATGTGTCAAATGAAAGTTTTATGTGCCGAATAGTCAGCAAATAGTCACTGCTTTTAAAGCACAAATAAGGCCAGGGTAAGCAGTTGTGTGAACATGGTTTGCATCTTTCTTTCTTTTTTTTATTGTTTATACTGTGAGATATTTTTCAACTGTAGCTCACACCAACTTGAGATGTTTCTTCAAACTCATTTATGACCAGCACCAAAAAATGACGTGCAAAATTTTTCAAAAAAAAAAAAAAAAAAAGATTTCTAATTTACACCTGGTAATAAATTGAAAACTTTAGCATTTTGAAAAATGTAAAACAAAGTATATTATTATTATTGTAAATAATCATTAATATTATTATGCTTTATTTATTTAATTAATTAATGTTTCAGATTCTGCACTATTTCTAGGTAATAGTGGTAATAAATTGAAAATCGTAGTATTCAAAAAAAATGTCAAACAAAAAACATTATTATAGAAAATTATATCTGTTAATATTATACTTTATTTAATAAATATTTCAAATTCTGCACTATTTCTAGGTAATACTGGTAATAAATTGAAAATTTTACGTTTGTGAAAAAAAAGTAAAACAAAGAACATTATTATATTATTATTGCGAATAATATTCATTAATATTACTATATTTGTATTTATTTTTAATAAATATTTCAGATTCTGCACCATGTAGTTAATAGTGAGTATTGTTAAAGGTTAGTCATTTCTGTCATTAATTACTCACCTTCATGTTGTACCAAACCGTACCAAACTTCATTCATCTTCGAAACACTTCAGATTATTTTCCACTGAGAAAAAAAAAAACAAAGTATCCACTTGATATTGATTATTGGCCAGCTCCTGCGTCAACATCACGTGCATGTGTCGTGCTGCTCACATGTACAGCGTCGGCCAATACTGAGCCGTCGTTCAGACGTAAACACGGAAGAGCTGCACTGCGTTCACTACATCAACAGCGTAGGAGACTGACAGGGGAGAGAAGAAATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGCACACAAAAAGTATTCTCGTCATTTCATAGCATTAAGGTTGAACCACTGTAGTCACGAGGACTATTTTAACAAAGTCTTTAATAACTTTCTGGACCTCAAAATGTGCAATGACCTTGCTGCCTATGTGTGGATTAGATACCCTTGGATTTCATCAAAAATATCTTCATTTGTGTTCTGAAGATGAACAAAGGTTTTACAGGTGTAGAACGACATGAGGGTGAGTACTTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTAAAAATAAAAAGTTTTAGGAGTTCTAAAATTTTTAAACAAAGAATATTATTATATTAATATTATGTAAATAATATCCATTAATATTACTGTATTTCCATGTATTTATTTAATAAATATTTCATACTTTGATATTAAATATTTCATATCTAGGTAACTAATCAAATAAGTAATTATGTGACATTGATCATATGAACTCCTACTGTACATACAGATGTTCTTCCGTTCTTCCATCTTCCCTGCTCACTGGATCATTGGGATCATCAGGTTCGTGGAGTTCATGCAGCTCCAGTGCAGCTGTTATTAAAGGAAATAATCAGTGGAGCAACGGGGCGACAGCTTCTCCCACTCTGGTACACACAGGATATTTTTTTTTTGGGGAGAAGCGAAAATCATATGCGTCATCGGCCTCATACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU301594 False 699 lncRNA 0.40 2 5360758 5362072
TU301588 True 3224 lncRNA 0.33 3 5360927 5365398

Neighbor

gene id symbol gene type direction distance location
CI01000063_05353701_05355458 ZFP36L2 coding downstream 4474 5352758 ~ 5356284 (-)
CI01000063_05304502_05306803 HCAR1-4 coding downstream 53955 5304439 ~ 5306803 (-)
CI01000063_05257128_05262520 KCNG3 coding downstream 97427 5256958 ~ 5263331 (-)
CI01000063_05252331_05253850 COX7A3 coding downstream 106908 5250005 ~ 5253940 (-)
CI01000063_05248902_05250362 NA coding downstream 110133 5248697 ~ 5250625 (-)
CI01000063_05473346_05474995 SIX2B, SIX2A, SIX2 coding upstream 107940 5473338 ~ 5475757 (-)
CI01000063_05616519_05617045 NA coding upstream 250408 5615806 ~ 5617112 (-)
CI01000063_05627849_05635031 SNCGB, SNCG, SNCA coding upstream 262360 5627758 ~ 5635031 (-)
CI01000063_05652987_05657351 BMPR1AB, BMPR1A, BMPR1AA coding upstream 286878 5652276 ~ 5657351 (-)
CI01000063_05689441_05689773 NA coding upstream 322905 5688303 ~ 5689881 (-)
G265705 NA non-coding downstream 10655 5349866 ~ 5350103 (-)
G265693 NA non-coding downstream 31190 5326132 ~ 5329568 (-)
G265665 NA non-coding downstream 78911 5264492 ~ 5281847 (-)
G265672 NA non-coding downstream 96415 5264142 ~ 5264343 (-)
G265653 NA non-coding downstream 133916 5221736 ~ 5226842 (-)
G265714 NA non-coding upstream 11346 5376744 ~ 5376976 (-)
G265732 NA non-coding upstream 48029 5413427 ~ 5413867 (-)
G265733 NA non-coding upstream 49032 5414430 ~ 5414668 (-)
G265742 NA non-coding upstream 83694 5449092 ~ 5449378 (-)
G265793 NA non-coding upstream 194133 5559531 ~ 5566376 (-)
G265567 NA other downstream 106818 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other downstream 170141 5188403 ~ 5189645 (-)
CI01000063_02725759_02726399 NA other downstream 2634223 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 3033039 2326741 ~ 2327309 (-)
CI01000063_02177769_02178239 NA other downstream 3182422 2177747 ~ 2178395 (-)
G265976 NA other upstream 922760 6283058 ~ 6290946 (-)
G266797 NA other upstream 1924097 7289495 ~ 7290224 (-)
G266660 NA other upstream 2073687 7439085 ~ 7441435 (-)

Expression


Co-expression Network