XLOC_010371 (ascc3)


Basic Information

Item Value
gene id XLOC_010371
gene name ascc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 1504280 ~ 1757521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020413
ATGTCTCCTCCTCGGCTCACTGGAGCCCTGCGCTCCTTCTCTAACGTCAGCAAACAGGATGATTTAACGCAGGACATTTATGATCTGAAGACCAAACGCTTAAAACGACAGGAAATATTTGCCCGTGATGGTCTGACATGGCAGAAGATAGTTCAGTTCTTCACCCAACATCTACAGAAGAAAGATCAGCCGGTGGCCACTCAGGAGCTCAAGAACATCCTCCAAGCAGCCAAACAGATCGtCGGTACAGATTTCGGACAAGACACCATTGAAAGTGCCGGGGTCTTCTTGTTTAAAACATTCCACAACAAAGACCAAATCGGTCATGAGGAAACCCGGGCCATAAAACACATGTTTGGACCGTTCCCGGCGTCTGCTGCTGAATTGTCCTGTGCAGCGGTGGGCCGTTTAGTGGCTCAGATCGGAGAATCTCAGGTGGAGGCTTTCATACAAACGCAGAGTTCCCTCAAGACGCCGGATCGTGGTTCTGTCTTTGGCCGAAACATTGCTTTCTCATTTGACACCTATGTGCTGGATGCTCAAGATGATTTTCCCTGGTCAGATGGGACTGATATGGAACAGACGGTGGACTTTCACAGCTTTCTCAATAATAATGTTGGTGAGAGAAGAGTTGGAGGTGTTTACTCTGCAGAAGAACTGGAGCAGAGGAACACAGACGGTTCCATTCTGAGACAGGAGGTGGAGAAATACCTGAATGAGGGAAATATGGTGTCTTCCAGTGCCGAGGAGCTCTCCACCTCTCTTTTCGAAATGCTGGCCTCCACAAGAAGCGATGACGAACTACAAAACGAGcTCTTTGAGTTTCTGGGTCTTGAGGGGTTTGAGATGATCTCCAGGCTCCTTCAGAGAAGGTCGGACATTGTTGATGCTTTGGTGTCCATCCCAGCAGACAGCAGGCATCACTTCACATCAGGTCTGCGAGATGAATCCAACATGCCCACATACGGCTGTCAGGTGACCATCCAGTCTGAGCAGGAGAAACAGATGATGAAGATCTACAGAAAAGAGGAGAAGAAGGAGAGAAAGCGCGAGAGACGAGGAGATGATGGGGAATCCTCTGAAAGTGCGTTTCATTTTGACCCCATGGAGCTGAGACTGCAGAGggagcAGGCTTTGCTGGCAGCACGCTCGTCTCCAGTTTTGGGCCGGCACAGAGATTATGAGCGCATTCGCTACCCTCACGTATACGATTCTTACGGCGAAGCCACCAAAACATCTGCGTTCATCGGAGGATCCAAGATGCTGCTGCCCGAGGGGATCAGAAGAGACAATAATAAGATGTACGAGGAGGTGGAGATCCCCCCCAACGAGCCCATGCCCATCGGTTTTGAGGAAAAAGCAGTGTTCGTCTCGGAGCTGGACGAGATCGGCCAGTTGGTGTTCAAGGGCATGAAGAGGCTGAACAGAATCCAGTCTATAGTGTTCGAGACGGCTTACAACACCAATGAAAACCTGCTCATATGCGCCCCCACCGGTGCCGGAAAAACCAACATCGCCATGCTCACAATACTACACGAGATCCGCCAGCACCTACAGCCTGGAGGAGTCATCCGCAAGGACCAGTttaagATTGTGTACGTGGCTCCGATGAAGGCCCTGGCTGCTGAGATGACTAATTACTTCAGTAAGCGATTGGAGCCTTTGGGCATCGCCGTCAAGGAGCTGACGGGAGACATGCAGCTGACCAAAGGAGAAATCCTGCGCACTCAGATGTTGGTGACGACTCCAGAGAAGTGGGATGTGGTGACCAGGAAGAGTGTGGGCGATGTGGCTTTATCTCAGGTGGTCCGGCTGCTGATCCTGGATGAAGTTCATCTCCTGCATGAGGATAGAGGGCCTGTTCTGGAGAGCCTGGTGGCCCGGACACTGCGCCAGGTGGAGTCGACCCAGAGTATGATCCGAATACTCGGTCTCTCTGCAACGTTGCCAAATTACCTGGACGTGGCGACTTTCCTCCATGTGAACCCTTTCATTGGATTGTTCTACTTCGACAGCCGTTTCCGTCCTGTTCCACTTGGCCAGAGCTTCGTTGGCATCAAGACTACAAATAAGGTCCAACAGCTGCACGACATGGAGGAGGTTTGTTATGAAAAAGTCCTGAAGCAGATTAAAGCGGGTCACCAGGTGATGGTGTTTGTGCATGCCCGAAACTCCACTGTCCGCACCGCCATGAGTCTCATCGAGATGGCCAAAAACCGCGGAGAACTGTCCTTCTTTCAGGTCGACCAGGGTGCAGACTACGGCCAGTGTGAGAAACAGatACAGCGCTCCAGAAATAAGCAGATGCGAGAGATGTTTCCTGATGGATTCGGGATTCATCATGCTGGAATGCTGCGTCAGGACCGCTCCCTGATGGAGAGCATGTTTTCCAGAGGATACCTGAAGGTTCTGGTGTGCACGGCCACACTAGCCTGGGGAGTCAACTTACCTGCACATGCCGTCATCATCAAGGGCACTAATATCTATGATGCGAAGCGTGGAACTCTGGTGGATCTGGGCATCCTGGATGTGATGCAGATCTTCGGTCGTGCCGGACGGCCACAGTTTGATAAATATGGAGAGGGAACCATCATCACAACACACGACAAACTCAGCCATTACCTGACACTGCTGACCCAGCAGAACCCCATCGAGAGCCAGTTCCAGCAGAGCCTCGCTGACAACCTCAACGctgagATCGCTCTCGGGACGGTCACCAATGTCGACGAAGCCGTCCGATGGTTGAGCTACACATACCTGTATGTGCGAATGAGAGCCAATCCACTTGCCTATGGGATCAACCACAAGGCCTATCAGATGGACCCGCAGCTGGAGCTCTACAGGAAGGAGTTAGTGGTGGAGTCCGGCAGGAAGCTGGATAAAGCACGGATGATCCGATTCGACGAGAGGACCGGTTACTTTGCATCTACAGACCTCGGCAGGACAGCCAGTCACTTCTACATTAAATACAACACTATTGAGTCGTTCAATGAGCTGTTCAATGCGCAGAACACTGAAGCAGACGTGCTCAGCATCGTCTCCAAAGCTGAAGAGTTTGAGCAGATCAAGgTGCGGGATGAGGAGCTGGAGGAGCTGGAGAAGATGTTGTGTAATTTCTGTGAGCTGCCGGCGTCTGGAGGAGTGGAGAACGGCTACGGCAAGATCAACATCCTGCTGCAGACCTACATCAGCCGTGGAGAAGTGGACAGCTTCTCACTCATCTCTGACCTGTCATATGTAGCGCAGaacGCAGCTCGTATCATGCGGGCTCTGTTTGAGATGGCTCTGAGGAAGCGCTGGCCGGCCATGACCTACCGCCTGCTGAATCTGTGTAAGGTGATGGACAAGCGTCTGTGGGGCTGGGCTCACCCGCTCAGACAGTTCAACACACTTCCGGCTTCAGCGCTGGCCCGGATGGAGGACAAGAACCTCACCATCGACAAACTCAGAGACATGGGCAAAGACGAGATCGgtCACATGCTGCATCACGTGAACATCGGTCTGAAGGTGAAGCAGTGTGTTCATCAGATTCCCGCCATCCTGCTGGAGTCCAGCATTCAGCCAATCACCCGCACCGTTTTGCGCGTCCGCCTCAGCATCACCCCAGACTTCAGGTGGAACGACCAGGTCCACGGTTCAGTTGGAGAGCCCTGGTGGTTATGGGTAGAGGATCCCATCAATGACCACATCTACCACTCTGAGTACTTCCTGCTGCAGAAGAAACAGGTTGTGAGTGGAGAGCCGCAGCAGGTGGTCTTCACCATCCCCATCTTTGAGCCCATGCCTTCTCAGTATTACATCCGCGCCGTGTCTGACCGCTGGCTGGGCTCTGAAGCCGTGTGTATCATCAACTTCCAGCACCTCATTCTGCCAGAAAGACACCCGCCACATACAGAGCTCTTGGATCTTCAGCCGTTGCCGATTACTGCTTTGGGAAACAGGGAGTATGAGAGCCTGTACAAGTTCACACACTACAATCCCATTCAGACGCAGATCTTCCACACGCTCTACCACACAGACACCAATGTCCTGCTGGGGGCTCCAACCGGCTCCGGAAAAACCATCGCTGCAGAGATGGCCATATTCAGGGTCTTCAACATGTACCCCACCTCAAAGGTGGTCTACATTGCTCCTCTCAAAGCTCTGGTTCGAGAGAGAATCGAGGACTGGAAGATCAGAATAGAAGAGAAACTTGGGAGAAAGGTGGTTGAGTTAACTGGTGACAATACTCCGGACATGCGAGCCATAGCACAGGCTGACCTGATCGTCACGACACCAGAGAAGTGGGATGGAGTGAGCCGCAGCTGGCAGAACCGCAGCTATGTGCAGAAAGTGGCCATTCTCATCATTGACGAGATCCATCTTCTGGGTGAAGACCGAGGGCCGGTTCTTGAAGTCATTGTGTCCAGAACCAACTTTATTTCATCGCACACCTCAAAAACGGTCAGAGTAGTAGGACTGTCCACCGCGCTGGCTAATGCACGAGATCTAGCCGACTGGCTGGGCATCGGACAGgTGGGACTGTTTAATTTCCGGCCCTCTGTTCGCCCGGTGCCATTGGAGGTTCATATTCAGGGCTTTCCGGGGCAGCATTATTGCCCTAGAATGGCCACCATGAACAAACCAGTATTCCAAGCAATCCGTACCCATTCTCCTGCCAAACCCGTCCTGATATTTGTGTCGTCCCGTCGGCAGACGCGGCTCACAGCTCTCGACCTCATTGCCTTCCTGGCTACTGAAGATGACCCCAAACAGTGGCTCCACCAGGACGAGAGAGAGATGACTGACATCATCGCCACCATCAGAGAGTCGAACCTGAAGCTGACCCTGGCGTTCGGGATCGGGATGCATCATGCAGGCCTTCACGAGCGGGACAGGAAGACGGTGGAAGAACTCTTCGTCAACTGTAAGATTCAGGTGTTAATTGCGACGAGCACGCTGGCGTGGGGCGTCAACTTTCCTGCCCACCTGGTGATCGTAAAGGGCACAGAATACTACGACGGAAAGACCAGGCGCTATGTGGATTACCCCATAACAGATGTTCTCCAGATGATGGGGCGGGCAGGGCGGCCGCAGTTCGATGACCAGGGCAAGGCTGTTATCCTTGTGCACGACATCAAGAAGGACTTTTATAAGAAGTTCCTGTACGAGCCGTTCCCTGTGGAGTCTAGTCTTCTTAGTGTGCTCTCCGACCACTTGAATGCAGAAATCGCAGCAGGCACGGTCACCTCAAAGCAGGACGCCATGGATTACATCACCTGGACGTATTTCTTCCGCAGACTGGTCATGAACCCTAGCTACTATAATTTGGACGACATCAGCCATGAAACCATTAATAAATACCTGTCAAACCTGGTGGAGAGGAGTCTGAGGGATCTGGAATGTTCCTACTGCATGGAGATACAACAGGACGAGCAAACCATCGAGCCCCTGACATACGGCCGCATTTCATCCTATTATTACCTGAAACACCAGACCATCCGCATGTTCAAAGAGCGCCTGAAGCCCGAGCTGCCGGTCCACGAGTTGCTGGCCATCCTGTCGGTGAGcaaacattcatttttaatgcaTCTTCATCCAGTGTCTGCGCTGCCCTGCTCCGACTACGGGACCGACACCAAAACTGTGCTGGACAACGCCATACGCATCTGCCAGGCTATGCTGGATGTGGTGGCGAATGAAGGCTGGCTTGTGTCCGCGCTGAGTCTCTGTAATCTGGTCCAGATGATCATCCAGGCCCGATGGCTGCACGATTCCTCCCTGCTCACACTCCCTCACATCCAGAAGCAGGAGCTCTATGTCTTCagGAGGTGGAGCTCCAGAGGTGTGAGGGCTGGATGTGGCCACCAAGGCCCAATCGAAGGTCTTCCTGAGCTGATTGCTGCCTGTGATGGAAAAGAGGACATCTTTACGTCTATGGTGAAGGAAGTGCTGCAACCCAATCAGATCTCTCAGATCAAACTACACAATTATGTGTCTAATATTTCTTTTTCACGCTACATACAGATGAGGAAATGTGTTTGGTTAATGCTTAAGATGTCTATCGgtgctctagaactgccagtttcagGCTGTTGA
>TCONS_00020414
AGATGCTGCTGCCCGAGGGGATCAGAAGAGACAATAATAAGATGTACGAGGAGGTGGAGATCCCCCCCAACGAGCCCATGCCCATCGGTTTTGAGGAAAAAGCAGTGTTCGTCTCGGAGCTGGACGAGATCGGCCAGTTGGTGTTCAAGGGCATGAAGAGGCTGAACAGAATCCAGTCTATAGTGTTCGAGACGGCTTACAACACCAATGAAAACCTGCTCATATGCGCCCCCACCGGTGCCGGAAAAACCAACATCGCCATGCTCACAATACTACACGAGATCCGCCAGCACCTACAGCCTGGAGGAGTCATCCGCAAGGACCAGTttaagATTGTGTACGTGGCTCCGATGAAGGCCCTGGCTGCTGAGATGACTAATTACTTCAGTAAGCGATTGGAGCCTTTGGGCATCGCCGTCAAGGAGCTGACGGGAGACATGCAGCTGACCAAAGGAGAAATCCTGCGCACTCAGATGTTGGTGACGACTCCAGAGAAGTGGGATGTGGTGACCAGGAAGAGTGTGGGCGATGTGGCTTTATCTCAGGTGGTCCGGCTGCTGATCCTGGATGAAGTTCATCTCCTGCATGAGGATAGAGGGCCTGTTCTGGAGAGCCTGGTGGCCCGGACACTGCGCCAGGTGGAGTCGACCCAGAGTATGATCCGAATACTCGGTCTCTCTGCAACGTTGCCAAATTACCTGGACGTGGCGACTTTCCTCCATGTGAACCCTTTCATTGGATTGTTCTACTTCGACAGCCGTTTCCGTCCTGTTCCACTTGGCCAGAGCTTCGTTGGCATCAAGACTACAAATAAGGTCCAACAGCTGCACGACATGGAGGAGGTTTGTTATGAAAAAGTCCTGAAGCAGATTAAAGCGGGTCACCAGGTAATG

Function

symbol description
ascc3 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in DNA dealkylation involved in DNA repair; DNA duplex unwinding; and cell population proliferation. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human ASCC3 (activating signal cointegrator 1 complex subunit 3).

GO:

id name namespace
GO:0006307 DNA dealkylation involved in DNA repair biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0008283 cell population proliferation biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-130214-2 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in DNA dealkylation involved in DNA repair; DNA duplex unwinding; and cell population proliferation. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human ASCC3 (activating signal cointegrator 1 complex subunit 3).

Ensembl:

ensembl_id ENSDARG00000086678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020413 False 6078 mRNA 0.52 39 1504280 1757521
TCONS_00020414 True 893 mRNA 0.53 6 1618394 1709328

Neighbor

gene id symbol gene type direction distance location
XLOC_010370 sim1a coding downstream 1257 1465624 ~ 1503023 (-)
XLOC_010369 NA coding downstream 151274 1350971 ~ 1353006 (-)
XLOC_010368 NA coding downstream 285710 1204142 ~ 1218570 (-)
XLOC_010367 irx2a coding downstream 940548 555746 ~ 563732 (-)
XLOC_010366 NA coding downstream 951653 551682 ~ 552627 (-)
XLOC_010372 NA coding upstream 190504 1948025 ~ 1949069 (-)
XLOC_010373 hace1 coding upstream 593999 2351520 ~ 2390931 (-)
XLOC_010374 hpxb coding upstream 636672 2394193 ~ 2414063 (-)
XLOC_010375 wdr26a coding upstream 724977 2482498 ~ 2504005 (-)
XLOC_010376 adcy3a coding upstream 757702 2515223 ~ 2558653 (-)
XLOC_010626 CR392024.2 misc upstream 19137591 20895112 ~ 20895175 (-)
XLOC_010364 NA non-coding downstream 1137136 354846 ~ 367144 (-)
XLOC_010363 NA non-coding downstream 1150500 346263 ~ 353780 (-)
XLOC_010378 CU929110.1 non-coding upstream 978155 2735676 ~ 2735799 (-)
XLOC_010380 NA non-coding upstream 1052196 2809717 ~ 2812008 (-)
XLOC_010384 NA non-coding upstream 1590485 3348006 ~ 3348709 (-)
XLOC_010386 NA non-coding upstream 2027353 3784874 ~ 3796633 (-)

Expression


Co-expression Network