G265246


Basic Information

Item Value
gene id G265246
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5705093 ~ 5706882 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301020
GGCATATCATTAATGTAGATATTAAATGCATTAAATGAGTAATGGAATATAATTGCAGTATTCTTTTGCTGTCTTTTGCTGTTTTGTGCATTTGTATTATACAATGTGTTTAGGCTACTGTTTTCATAACAAATACCATAGAAACAATATAGATACTTTTTTTTTTTTTTTTTTTTTACCATGGTAGAGGTGCAATGCTTGATCTTTCCTGTGGTTAACATGATCCAAATATTTAAATGTTATAGTTTTACAGAAGCTACTGTGTTTGTTAATGAACATAAATTTACATCTGCATCCCAATTCAAACTACTGCTACTGTCATTAAACTCAAGCTACTGACAAATGTGCATTTATAAGATACACAAATCATGTATTATTAATTTGCGAAATGTTCACGTGTTTGGAAAGTGTTTGGAAACCACAACTTAACTGTCTGGTTTCTACAACTTTTACTCAGGAGCGAAAACTTGCCTTTAAACTTGGAAAAAATTAAGATTTGAAATTTATTGTGATAATTTTCGATAATGACTGATATGAAAAAATTGTGGTCATTGGTGTCTGAACGAATCGCTATTTTTGAATGAATCGGTTGAATGAATGATTCAATTACTTACTCATAATGTTTAGTTCCTGAAAAAAAATCAGCATTTTGAATAAATCGGATGAATGAATGATTCAATGATATACTCATAATGTATTGTTCCTGAATGAATCATTATTTTGAATGAATCAGATTAATAAATGATTCAATGACTCACTCCTAAGGATCTTTAGGTGGCTGTCGTCACCTACTGGTGTAACAATGTAACCTGCAGCAAGACTCAGTACATATTAGCACTACTGGAATGCTGCTCGGCCAATCAAACTCAAGAACTGGGACTAACTGCTGTATAAAAAAGGACGAAGAACATTTAAAAAACAGTGCAGTGGAACATAAAACATGGACTGGTTTGACAAAGCTCAGAAACCAAGGGGAAGAATTCTGAAATCCCATCTTTGCAATAAGTCAACATAATTTTGCTCTTAACTCCAAATCAGCAAGGAAATGAGAAATATTAGGCTACTATAGAATTTACATAATAAATTGGAAAATATTCACATTCATTTGGCTTTCACATAGTCGCTGCATTTTTATGCTTGCATTTAATCGCTTGTATTTAACTGACTTTACTGTTGAGACACATTTCTCCTTGGCTATTACGTCATTAAATCCCACTGCATGCATCACTGGTCAGGATACTACAAGCTACAGTAGATGAAAAAAAGCCATCATCATCCCCCTCCCTCTTTTTACATTTCACTTAAGCCAACAGACTGCTGCTTGACCAACACTTCAATCATGGAGCTGCTATAGATAAAAGAAAATATAATCATCCCCCTCCCTCTCTTCACATTTTACTTAAGCCAACGGACTGCTGCTTGACCGACACTTCAATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU301020 True 1439 lncRNA 0.34 2 5705093 5706882

Neighbor

gene id symbol gene type direction distance location
CI01000063_05673923_05678546 NA coding upstream 26368 5673829 ~ 5678725 (+)
CI01000063_05639341_05650366 NA coding upstream 54411 5639290 ~ 5650682 (+)
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding upstream 90447 5597324 ~ 5614654 (+)
CI01000063_05563124_05584474 NA coding upstream 119989 5563124 ~ 5585104 (+)
CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding upstream 148631 5490285 ~ 5556462 (+)
CI01000063_05894405_05894580 NA coding downstream 187523 5894405 ~ 5894677 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding downstream 215312 5922194 ~ 5936249 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding downstream 239652 5946534 ~ 5948532 (+)
CI01000063_05954897_05957678 ARMC7 coding downstream 248015 5954897 ~ 5957753 (+)
CI01000063_05973598_05981144 NA coding downstream 266716 5973598 ~ 5981144 (+)
G265156 NA non-coding upstream 15519 5668902 ~ 5689574 (+)
G265198 NA non-coding upstream 214287 5490577 ~ 5490806 (+)
G265173 NA non-coding upstream 269453 5435399 ~ 5435640 (+)
G265142 NA non-coding upstream 322169 5382707 ~ 5382924 (+)
G265252 NA non-coding downstream 10738 5717620 ~ 5717948 (+)
G265253 NA non-coding downstream 13249 5720131 ~ 5720622 (+)
G265254 NA non-coding downstream 16264 5723146 ~ 5723354 (+)
G265255 NA non-coding downstream 17506 5724388 ~ 5724643 (+)
G265257 NA non-coding downstream 22712 5729594 ~ 5729833 (+)
G262436 NA other upstream 2990576 2713615 ~ 2714517 (+)
G262423 NA other upstream 3462128 2241408 ~ 2242965 (+)
G262194 NA other upstream 4560086 1139352 ~ 1145007 (+)
G262060 NA other upstream 4994539 710110 ~ 710554 (+)
G261984 NA other upstream 5037711 665800 ~ 667382 (+)
G265391 NA other downstream 206901 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 628396 6335618 ~ 6338283 (+)

Expression


Co-expression Network