G265333


Basic Information

Item Value
gene id G265333
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5898387 ~ 5952501 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301132
TGAGGGTGAGTAAATCATGGGGTAATTTTTGGGTGAACTAATTCCTTTAAGATCATATCATCTCCACTAACATCTTGGTGGTGGCTCCAATTGTCTGTGAAGGTGCACTCCATAGGTTTGCTCAAATATGGTTTATTTACCTAAATGTGAGAGGACTGGGCCAGTGTTTTGACTTTTAGCTGAAGATTCAAAACAAGAAAGGCTCTTTACAAAAATCTTGGAATCTATGGAGTTCACCCTAAGTGCTAAACTACGAGTTTCTCTCCTCATCTGTCTGTCGGTATGAACTGAATTTCAGGATTAGACTGTTCTTGTCATTAGTTAGATCATGTTCATTCTTCTTGTTAAAGTCAACATGAAACAACGGTCACAACTCACTTTACTTCAATAATGAAATTTCCGAGTGAAACGAGATATTCAATGAGATAAATCTAGGACTGTATGGCATTATTTCTACTGCCATTCACAAGTTTGGAGTCAGTAAGATTTAGCTTTTTTAAAAAAGTCTTAGGCTTACCAAGGCGGCATTTATTGATCAGAAATACAGTAAAAACAGCAATACTGGTTAATATTATTACATTTCAAAATATAACATAATATATTTTAAAAGTGATTTATTCCTGTGATGGCAAGCTGATTTTTCATACTCCAGTCACATGATCTTTTAGAAATAATATTTTTGTGAAAACAGTGATACTTTTTTTTTTTCGGGATATTTTCGTGATTAGAATGTAAAAAAAATATATAATTTTTTTGTAAAATTAAGTCTTTACTGTCACTTTTGATCAATTGAACGCATCATTGCTGAATAAAAGTGTAATTTTCTATTTAAAAAAAAAAAAAGGTTACTGACCTCAAACTCTTGAATGGTAGTGTACCAGAACAAACTAGCGAATCTACAGTAGCTAAAGCTGAGTTGAAAAAATAGCTAAAAAAAATTAATGAGAGATTACAAAGATAATTTTTTTTTACATGAATCTAATGAATCATGCATAGTAAGAACAGGAACTCGTATTATGAAAATAATGGGTATTAATTTTAATTTCATGTTGACTTTAAGCATGTTTAATGAATAAGAAGCTTTAATGTCATTTTATCCATTTGAGAAGACAAACAGAGTCATTTCAAGAATCTGTGAGTGTCTTTTGGATCAGGAGGGTCTAGAGGATCCACACCTCTACCGCAGTGTTATGCAGATCACTGCAGTGCTGAATCAGTGTGTCCTGGGAAACGGTACAGAGAGAGGACGTCCAGGGCTTGTGTTTCTGCTGCGTAAGACTTATCAAAACTTTAGATGAGCTTTCTACAGAAATCCAGAGAGTGTTTAGATCAGGATAACAGCAGAGTGGGCCTTGGCAGTCTCCAGTACACTTAAGTGATTTGATTTTGTAATAGTGCCGTACAAATATTACATTAGTGTGTTTCAACGTAACAAGAACAGACAGCGATGTGTAGCTGATGACGGTCATCAAATTACCTTTGTACTGATGGACAGTAGAGTGTTTGTGTCTGGTGTGTCTCTTGGGGCCGTATTGAGTGGTCTAAGCTGTTTTAGGCCTTTGCCTGAGAAAATCTACAGTTTCAGAGCTTCAGAGTTTGTTCCTGCTTGCTTATCTACACCAATTCACTGCAGTGTGAGCTTTGCTACTCATATTAACTGTCCTTTTGGTTTTGGGAAACCTGCTGCTTTTTTATGCCAAATCCCATCTAGTTTATCCAGTTGGTGTGGACTGAAAAGAAATCCTAGCAACAATTCTAACAGTAGTATGAATGGTCTGATGGCTTGCATTGTAGAGGGCTCAAATGCCTCATTTGAAGCATCTAACCTCAGTCTCATGTTTCTGTGAGCACAGCAGGACAGTGAACGGTTTGGACCCCGGCGCCGTGACGAACATCACAGCCCCGCCACGTTCCAACTCTCCATCCGGCCTGGTGCTCAGCGTGTGACACTCACTCCAGAGACAAACTCCATTACATCCACTGAAAGAAGCACTATACAGCAATATAACTAGTCCTTTTAATACACTACTGAATCTGAGTTGAGATTACAGTGGGTTACAACAAGGTTAGTAATGCCCAACTGTAGCAGCACCTCATACTAGTCTCTATGTTGCAATATCCTACATTTTACTGCTGAAATACTTGTTAATATTTCCTAAAGATGTATATACCCATCTAATATATTTATGGTTACTGTTAATTTAGATACAAGCATATACAGTATGTACATAGTTAATTAATTTTTCTCTATTCTTTGCAAATGTGATGTCTTTTAACCACGGTCTAAAAATGTATTTATTGCTGTAGTGTTGGAAGGCAATGTATGTGAAATCTGAAAACAAAAGGGAATTTACACTATTAATATATGTTGTGCAACACATGCAGTGTTTGTGTATAAGAAGGTAAACTTGATATATAAATGATATACTGTATTTTGAAGGAAAAAGAAAGATGTGGAGCTATGACTATCTAGACTTACATGTGCACTAATATCCCCAATTCTTCAATCTTGGTTCACAAGGGCAATTTTTTGTTTCCAGGTAGGATTTATATTAAGTGCTAATGTGTGCCTCAGAACTTCCCGTATTTTTGTCCCCTAAAACGTGGCCTGGTGTAAGTGTGAAACGTCTTTGGAGTTGCACATGAAAGATTTGTTTTGGCTCCAGCAGGTTTGCATTTTAAACATTGTTTCAGTCATATTGATAATTGACTGCTTTAGTAATACTGTATGACACTTATGCCCTAGAGTCTCAGGTTGGTTTCCCAGCCTCATAGTATTTGCTGGAATATCCATTCATTATTTTTTTTCCTTGTTGTGAATGACAAATCTTATTCATTTTGGTTTGAATAGTGCAATGTGTTAAAGCACTTTTTGTTACTTTTGCGTGCTCAAATAAATGGTAGTGTTCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301132 True 2913 lncRNA 0.36 2 5898387 5952501

Neighbor

gene id symbol gene type direction distance location
CI01000063_05894405_05894580 NA coding upstream 3710 5894405 ~ 5894677 (+)
CI01000063_05673923_05678546 NA coding upstream 219662 5673829 ~ 5678725 (+)
CI01000063_05639341_05650366 NA coding upstream 247705 5639290 ~ 5650682 (+)
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding upstream 283741 5597324 ~ 5614654 (+)
CI01000063_05563124_05584474 NA coding upstream 313283 5563124 ~ 5585104 (+)
CI01000063_05954897_05957678 ARMC7 coding downstream 2396 5954897 ~ 5957753 (+)
CI01000063_05973598_05981144 NA coding downstream 21097 5973598 ~ 5981144 (+)
CI01000063_06035175_06080992 ARHGAP12, ARHGAP12B coding downstream 82674 6035175 ~ 6080992 (+)
CI01000063_06157144_06165234 NA coding downstream 202484 6154985 ~ 6165328 (+)
CI01000063_06222033_06227075 ZNF438 coding downstream 269532 6222033 ~ 6227665 (+)
G265324 NA non-coding upstream 10962 5884368 ~ 5887425 (+)
G265284 NA non-coding upstream 43124 5819775 ~ 5855263 (+)
G265262 NA non-coding upstream 98544 5753648 ~ 5799843 (+)
G265276 NA non-coding upstream 101911 5795455 ~ 5796476 (+)
G265261 NA non-coding upstream 149173 5749010 ~ 5749214 (+)
G265395 NA non-coding downstream 7188 5959689 ~ 5960136 (+)
G265397 NA non-coding downstream 8671 5961172 ~ 5961486 (+)
G265364 NA non-coding downstream 15092 5967593 ~ 5970470 (+)
G265380 NA non-coding downstream 84714 6037215 ~ 6130744 (+)
G265382 NA non-coding downstream 88542 6041043 ~ 6053411 (+)
G262436 NA other upstream 3183870 2713615 ~ 2714517 (+)
G262423 NA other upstream 3655422 2241408 ~ 2242965 (+)
G262194 NA other upstream 4753380 1139352 ~ 1145007 (+)
G262060 NA other upstream 5187833 710110 ~ 710554 (+)
G261984 NA other upstream 5231005 665800 ~ 667382 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 382777 6335618 ~ 6338283 (+)

Expression


Co-expression Network