G265391


Basic Information

Item Value
gene id G265391
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5913783 ~ 5919029 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301220
GCTTGCTTGGCCTTGTCCATGTACGTGACAGTGAGTTCTTCATCCACTGGGTTGTCCACAGGACCGACCATGGGTACCATCTGTCTGTGAGATGCAAGCATGAGAGCCTCTTTCGCCCGCTCTGGAGAAACAAGTGGAGGTGGGACAGTGGGGGGCTCCTGGAAGCCACTGTCCACTTCAGCAGCTCCTGATGGACTTGAATTCTCAGAGGAATTTTCAGCCTGGTGCGACCATTCAGCCTGCGCGGGCTGGTAGACCACTTCTCTGCGTGCCACCCCAGGCATTATGTGCTGTTGCTGAGTCCCTGTTCTCTCAAGATCAGATACAGGCCAGCTCTGTGTTTGAGGGTACATGCAGATGTCCTGTGCGCTCTCATAGCCACTCATTTCCGAAGTCTCCTCCTCTTGGGGTGAGGCTTGGCCAGGGCTCTTGGCAGGAGAGCTACTGGGACTTCGTCGTCTCTGCCTGCGCTGCTTCTCTTGTGCTGCCACATCTGCGTCGCTGTCTGTCTCCCCGTAGTAAGCTTCACTATCTGGAGGGGACGTAAGCCACTCGAGGCCGCCGGTGGGAGACATGAGCGATGCTCTGTGAACACCAGGCGGTTTAGAGGTAAGTGGAGGGGACAAGGCTCTCAAGGCTGCGCGGTACTCTTTATCAATACGGGGAGACGGGGCCCGACCCAGAAGCACCACTGACTGATATGCAGCTGGGGCCCTGAATGGATAGCAAAGTGATTATTTTGAATATAAAATTAATAGCATGACTCTCAACTCGTCATGATAATGATATCTCACCCTGACCTTCTGATTCGCAGATGGAGTGTTCCTCTGCCACTATCAATCAGATTCATAGCCTCAGCATGAGATAGTGTTCCACAGGACACATCATTGATTGACACCAGCTCATCAGTCTCTCTGAGCCCAGCCCTGCAGGCCTTACTGCGCTTCCTCACCTTTAACAGCAGGGGGACACAGAGTCAGCACAAACTTTCTGTTGATGAGTTTCAGGGAGATAAACAATTTTGTAAGCACATAAACTTCTAGCCATTGTTTATTTATTAAGATATTACTTCATTTGTGAATATCATGTTAGTTTAGGACAGTCATTTTTTAGTATCATTCAAATTCCCCCACAAAAGCACATCGCACTTTTACCTCTGTCTTTACATAACAGTTTGGGGGACTTTCCAGGGCTGGACTGGACACTATTATCACTAACTACTTCTCGGAGGTAAACTACATAAACAACCCCTGATTACACCTTAACTGTTTGCCAAGTATTTACAAAATAGCTCCACTCTTCATTCAAAGGCTCTGTAAGTTCTTGCTTGGAGTGTGTATCATTCATTCGTTTTCTCAATGTGTCTATTGTAAATCCTGCCTATTCAATAGTGCATCGATTTTCAAATATGACTATTAAATTGTGAATCGTTTGTGTGGATAAACAGTCGATTTGAAATTCTCTGTGCTATATTTATAATACATATAAATAAAGTGTTACGTGTGCGAAATAATGGTGACATGATCCTTCATGCGCCAAGGAGCCTTGAAATCGTTCAGAAAATGTTTTGTTCCGACCGAACTGTTAATAACTTTAATGTTAATAATGAATTTTTGAACAAATATTTCGAGTCAGTGAATCGTTGACTACCCTACACTAACTTGTTATTACCATTTACTGAACTTGAAAACTTGACAAAGCTTTTGACAAAATAGACCCTTTTCACATTTCCGGATTTCTCAGAAGCGGAAGTAAACTTATAAATCGGTGAATGAAAGACTACATTTATATATATATATATATATATATATATTATTTGTGTTCCCATTTGCTCAAATAGCAAAATAAAAACTCCAAAATAAATTGGAGTGTTTTCACGACTTTCAAAAAGAGGTAAAAAAATAGAAAGATATATGTCGGTTTTACCGTCACTCCCACAGCTGCTGTATTAGAAACACCCTCACAGCAGCGTTGACTAGTTTTTTTGTAATTTGATGGTAATAAGAAAAAGGTAATATAATACAAAGTATAGTGTTATAAATGTAGGCCTACAAATAAAAAATAAAAAAATAAAAAAATGAAAATATAAAAAACTTTAAAACATCATCACAGTCTGTGAAAAGGGTCCATGATTTTTCTGTTTTCGGTTTTCTGTTGTTTTTTAAAGAATCGGTTGAATGAATGAGTGACTCACTCACTCACAAAAAGAATAAAAACGCAAAAAGACTGAACTTACTCATGTAACCTGCAAAATGTATCCCTGAACAAATCTTTTTGATAAAAATGTTTCTATTCAAGTTACTTTTGGTCTTTCTTCTTTTGCATAAAATAGGCCTAGGCTACTGCACAAGTAGGAAAGAATTCTATAAAAATAGTGTATGCTACCGAAATGTAGCCTAATCAAACCATGTATAAAATCAAATAGAATTGTCCTAAATGAGCAAAAACAATTTTAGAATCAACTGGAAACCAGTTAACTGTAACTGTTGGTTAGGCTTCATCCAGTGAGTTTTGAATTGGCAGATTGGGGGGATGAAGCTACAGTATGTCTAAATAGAGTGGCTTATATGGCTGTTTGCCCATCTTCAAATACCATCTCCTTGAGTGTAGGGCCTTCCTGAGGTCATCTGTCAAATATAAGAGCGCTTTTCTAACACTCACTTCATCAACACGTACCAAGCTAAATGTCTGGCCACATTGCTATCTTTGTCTCTTGCTTCCAAAGGCACTTTACAAACTAACTGTTTTGATGAGTTGAGGGTTTATGTTTTCACCAACCTAAAGCAAATATGTATTTTCCCCTACAAAGACCTAAAGGGATTTAACAGCTCAGCGCAGCTCAGAATATTAGCCCAATATAATGTCTAATTTTAAAAACAGCTTTTTGTATCTGCAAGTTGTGGACAAAAATAAATGCACAATGCTATGAAGACCATAAAAAACAACAAGCACAATGTTATTTTTGCTTTTCTGTGAAAACTAGTAACACAAATTTGTAATTGGAAGACAATAGATGAAAGCCGGGCCTGTTCACCTTCTTTTTATTGCCGATCAAATGGTCTGAGAATGCAAGTTGGGGGAACAACATGTGCAGCTGGTGCCAGGGCAGCTGTTGCCTCTTGGCAGACCTGAACCAGGGCATGTCATGAATTCACCATGTGTTCCCCACATAGCCTAAATAAAGTGCTCATCTATTGTAAAGAGTCAATTGTCACTCAGCCTCAGTAGATTCAGCTTAAAACTCAATGAGTGCATGTTTATGAGAAGTGGACTGTCTAATTTAGTACTAATATAGTAAATGAAGTTGATATGTATACCATAACGCATAGTAAAGGATTTGAAGTATGGATTTACATTATAAGTTATTATGAGGACACCCTGTACAGTATGTCTTCAGTCATTTTCAAAACATTGCCAGAGCATTTTGCTAGCCAAGCAAGTGTCACTGAGGTCGTTCTAAATGCCAGGATTAAAAGAAGCAATCAGAGATCCGGGTGGATCAGAATAGCTCAATTAAAAGTAGAGATGGTCATGGAAAAAAGGCCACACCGCAAATGGAAACAAGATGAAAGTCTGTAGAAGTGACCTTGAAAATGAATGACGAGGGGAAACTCCCTGGAGCTGGACGGACGTTTTTTTCGAAGCAAAAATATGTTTCTCTAAATAAAAAAAGTCAGGGCCATTGCTCTGTGACAGATATCTTTTCCCTCAGAACATGGAAAGAGTAGACTAGACAGTCTCTGGCATTGCTCACCAATTCAAAATAGCTCTTAGATCAGGGAAAATGCATTGCACACAGTTGTCACTTAACAAATGGGGCATACTGTGCTTATAAGTAGACACTGTGGCTGTAATTCTACTCAGTCCTGAAATAACATCCTCATTTAAACAGAACTGTGTGAGAATGCTTCTTTGAAAGATCTGGATTCCAGAGGAAGCCAAACAAAAGCTGTCAATTAGATAAGAGTGAAGAGATGCACTGTGAAGCCTAGCAGATTTATCTATGGACCAGGAATGCTTACGGCACATGCTCATGAACACCGTTTATCAACAGATAAACTAAGTGCGCTCTGGCCTGAAGTTGAAGTATTATGTGACAATGTTATCTTATTAAATGTTTGCCCTTATTAAATAAGAGATGTGTCTGTACTATATCTATCTTAATTGCATTTAAGGTTTTGAAACATAGTATTTCATTTAAAGGGCCCCAAAAAGATAGTTCTTATCGAGTTCATACCAATATGATACAGTATATGACAAACATATCCTCACAGAATGGGCCACATGACCCACATGAGTATAAAAATCAGAAAATGTCCTCAATAATACTTAATAATACTCTTTAAGGCTTATCAAGTCTTATAGACATTCCTCATTGACATGTGGAACAAACATATCTGTACATTTAAAAAAAAGTATATTATATCTGTACATCTGATCAGGCCTAAATTTCA
>TU301223
GCTTGCTTGGCCTTGTCCATGTACGTGACAGTGAGTTCTTCATCCACTGGGTTGTCCACAGGACCGACCATGGGTACCATCTGTCTGTGAGATGCAAGCATGAGAGCCTCTTTCGCCCGCTCTGGAGAAACAAGTGGAGGTGGGACAGTGGGGGGCTCCTGGAAGCCACTGTCCACTTCAGCAGCTCCTGATGGACTTGAATTCTCAGAGGAATTTTCAGCCTGGTGCGACCATTCAGCCTGCGCGGGCTGGTAGACCACTTCTCTGCGTGCCACCCCAGGCATTATGTGCTGTTGCTGAGTCCCTGTTCTCTCAAGATCAGATACAGGCCAGCTCTGTGTTTGAGGGTACATGCAGATGTCCTGTGCGCTCTCATAGCCACTCATTTCCGAAGTCTCCTCCTCTTGGGGTGAGGCTTGGCCAGGGCTCTTGGCAGGAGAGCTACTGGGACTTCGTCGTCTCTGCCTGCGCTGCTTCTCTTGTGCTGCCACATCTGCGTCGCTGTCTGTCTCCCCGTAGTAAGCTTCACTATCTGGAGGGGACGTAAGCCACTCGAGGCCGCCGGTGGGAGACATGAGCGATGCTCTGTGAACACCAGGCGGTTTAGAGGTAAGTGGAGGGGACAAGGCTCTCAAGGCTGCGCGGTACTCTTTATCAATACGGGGAGACGGGGCCCGACCCAGAAGCACCACTGACTGATATGCAGCTGGGGCCCTGAATGGATAGCAAAGTGATTATTTTGAATATAAAATTAATAGCATGACTCTCAACTCGTCATGATAATGATATCTCACCCTGACCTTCTGATTCGCAGATGGAGTGTTCCTCTGCCACTATCAATCAGATTCATAGCCTCAGCATGAGATAGTGTTCCACAGGACACATCATTGATTGACACCAGCTCATCAGTCTCTCTGAGCCCAGCCCTGCAGGCCTTACTGCGCTTCCTCACCTTTGCCACTTGGAGGGGTTTCTGGTGCTCAGCTCCTCCTTGTAATCGGAAACCCCACGGTGCACCTCCTGAGAGGTTCACCACTACTTCCTCTGCAACCATTTTTCTTACGTTGTTCCTGTGTTTCTTTTAATGTTTCTTGGTTTCTATCAAAAGTCTCGTCCCATCCCTGGATGTTCAGTCCTCCTCCGTGGCCCAGACTGCCTGCAGAGCTTCTGTCAGTCCTGGGAGGTGAGCGCAGATACACACCCCATGACCATGTGCAAATGAAGTGTGGGGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU301220 False 4454 lncRNA 0.39 2 5913783 5918422
TU301223 True 1234 TUCP 0.53 2 5913783 5919029

Neighbor

gene id symbol gene type direction distance location
CI01000063_05894405_05894580 NA coding upstream 19106 5894405 ~ 5894677 (+)
CI01000063_05673923_05678546 NA coding upstream 235058 5673829 ~ 5678725 (+)
CI01000063_05639341_05650366 NA coding upstream 263101 5639290 ~ 5650682 (+)
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding upstream 299137 5597324 ~ 5614654 (+)
CI01000063_05563124_05584474 NA coding upstream 328679 5563124 ~ 5585104 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding downstream 3772 5922194 ~ 5936249 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding downstream 28112 5946534 ~ 5948532 (+)
CI01000063_05954897_05957678 ARMC7 coding downstream 36475 5954897 ~ 5957753 (+)
CI01000063_05973598_05981144 NA coding downstream 55176 5973598 ~ 5981144 (+)
CI01000063_06035175_06080992 ARHGAP12, ARHGAP12B coding downstream 116753 6035175 ~ 6080992 (+)
G265324 NA non-coding upstream 26358 5884368 ~ 5887425 (+)
G265284 NA non-coding upstream 58520 5819775 ~ 5855263 (+)
G265262 NA non-coding upstream 113940 5753648 ~ 5799843 (+)
G265276 NA non-coding upstream 117307 5795455 ~ 5796476 (+)
G265261 NA non-coding upstream 164569 5749010 ~ 5749214 (+)
G265395 NA non-coding downstream 41267 5959689 ~ 5960136 (+)
G265397 NA non-coding downstream 42750 5961172 ~ 5961486 (+)
G265364 NA non-coding downstream 49171 5967593 ~ 5970470 (+)
G265380 NA non-coding downstream 118793 6037215 ~ 6130744 (+)
G265382 NA non-coding downstream 122621 6041043 ~ 6053411 (+)
G262436 NA other upstream 3199266 2713615 ~ 2714517 (+)
G262423 NA other upstream 3670818 2241408 ~ 2242965 (+)
G262194 NA other upstream 4768776 1139352 ~ 1145007 (+)
G262060 NA other upstream 5203229 710110 ~ 710554 (+)
G261984 NA other upstream 5246401 665800 ~ 667382 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 416856 6335618 ~ 6338283 (+)

Expression


Co-expression Network