G265890


Basic Information

Item Value
gene id G265890
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5922517 ~ 5926035 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU301787
TTTCATTTTTGCATGAACTAACCCTTTAAGTTGTATTGAACCCAGAAATTTCTTTTCATACATGTAAAAAGGGACATTACAGCATATGCATCCTGGATCAGCTGGATGACATTATGAGAATCCTCGGACAGCGTTCCCACTGCAGTGCCAGGGATCAGCTCACTGTAGTTCTACAATGGATAGAGGAGAAATCTTCAAAAGTGTCCTTAAAAATCTTATCACACATTTACTACATTGATTTACGGTAACATTTAATAACCTTCTTACCTTATAAAGTGATTCCACATGGCTAGTCACAGCAAAGATGAGATTTATATTGTTTTCTGACATTTTCTCTGTGATTAATGCCAGTGATGGATAGTCCTAAAAAAATTTTAGCATGCGTAATTAAAAGTAATATGCTGTAGACACATTATAGTGTGTCTAATACTAAATATTCCATCAAAATGAATGTTATGTCTATATGTTCCACCTAAACTGCATCAAGTTTGTGTGGAAAAGTACTTAAAAAGATCACTACCATAGTTGTAGACATATTGTAGATGTTATCTGTTCCCACATAGCATTGGCCGTCATTGGGTCGCACAATTCCCGCCAGGCGCCCATCCAGTGCCACATGTGTCTTGGCATCCGTGGTGAAAACCAGTAAATGAGATGCACCTGGTCTCCAACCAATTTTCTCCTGGGAGAAAGACAAAAATGGTCAAATATGAGAGGTCAAACTGACTGTAGGCCAAAAATACGTATAAAGGTGCCACAGTGTATTTCTTTTTGCTTGTTTAACTAGTTCAACCTTGCACACGGCTGCCTGTATGATGGCGTCGAAGCCTCCCTCTGGGGCGTCCCTGTTCCGAGACACCTTCTGTTTCTTCACTTCCTCTGTAAAGCGGCCCACCTCCTCCGTCAGAGACAGAACATGTCTGTAGCCAAACTGAGGCTGGCATTTGTATGGGATTCTAGCATACGAGTAACAGGGATTTAACACGGCCTCTTGAGGGGAGATGTACATGTATGGGGACACAGGTTTATCCACGAAAGCCCCAAAGCCCATGCGCAGATTACTGGTGGTTTTACTCATCTCTTCAGCCAGGCCTCGCCCCAGCCTCCGCAACTGAGACAAGTCGTCATTCATGGAGTAGGACAGGTCCATCAGATAATACAAATCCACTGGGTAGTCCTCAACCTGACGGACCTTTAGTGTGAAGATCTGGGATCACCAGGTCTCAGAGAGATGTTTATGCTCTGAGGTTTGATCTGGGTGACGTCGGTGGTGGATCCCGAGGCCTTGTCACTGAGATCCTTGTCCTCTGTCACCTGCATTTTGCTGGTGGGATACTCCAGAGCTCCTCTCCTGCATCCTGCATCTATGAGGTTCTTCTTCAGGTCACATCGGGAGGAGCCAGGCACATCCTGTCCAAAATCCTGATAACACCAGGCACAGGTAGGATGCACTGCCAGGCACTGCTGACATGTACTGGCTCCTCGAGAAGTGCAGATGTTGGAGCCTGGGAGAGAAAGAAAATGAACAAAAACATGCCTAATCATTAACATAAGATCAGATTCATTGCCTCTATTTGTAGGGGAATTAAACGATCAGCATCACCAGATTGTATCAGACAAAACATTTTACAAACACAAAAGTTCATAAAGTTCACATACACTTATCAGACTTTTATCAGACCTGATCTGTCAGATATTCAAGGTATAACTGAAACAAGTGCATACTGAATGAACACATGCCTAAGTCTTATAGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU301787 True 1756 lncRNA 0.43 4 5922517 5926035

Neighbor

gene id symbol gene type direction distance location
CI01000063_05911229_05918849 NA coding downstream 3474 5911175 ~ 5919043 (-)
CI01000063_05903771_05910321 SYNPO2LB coding downstream 12079 5903727 ~ 5910438 (-)
CI01000063_05896710_05901541 NA coding downstream 20976 5896378 ~ 5901541 (-)
CI01000063_05849340_05854550 NA coding downstream 66514 5849314 ~ 5856003 (-)
CI01000063_05783589_05833813 USP54B, USP54 coding downstream 87793 5783589 ~ 5834724 (-)
CI01000063_05950749_05954473 NA coding upstream 24635 5949613 ~ 5954558 (-)
CI01000063_05962667_05971952 ACSF2 coding upstream 36297 5962332 ~ 5971952 (-)
CI01000063_05983940_05990611 NA coding upstream 57420 5983455 ~ 5990611 (-)
CI01000063_05992697_06005239 SLC16A5A, SLC16A5 coding upstream 66544 5992579 ~ 6005359 (-)
CI01000063_06011344_06017382 KCTD2 coding upstream 84628 6010663 ~ 6017382 (-)
G265793 NA non-coding downstream 356141 5559531 ~ 5566376 (-)
G265742 NA non-coding downstream 473139 5449092 ~ 5449378 (-)
G265733 NA non-coding downstream 507849 5414430 ~ 5414668 (-)
G265732 NA non-coding downstream 508650 5413427 ~ 5413867 (-)
G265714 NA non-coding downstream 545541 5376744 ~ 5376976 (-)
G265889 NA non-coding upstream 2707 5928742 ~ 5931804 (-)
G265802 NA non-coding upstream 212656 6138691 ~ 6151199 (-)
G265789 NA non-coding upstream 249642 6175677 ~ 6177315 (-)
G265776 NA non-coding upstream 259899 6185934 ~ 6188664 (-)
G265960 NA non-coding upstream 276930 6202965 ~ 6235379 (-)
CI01000063_05616519_05617045 NA other downstream 305405 5615806 ~ 5617112 (-)
G265567 NA other downstream 668577 5183279 ~ 5183287 (-)
CI01000063_05189361_05189645 CRIPT other downstream 731900 5188403 ~ 5189645 (-)
CI01000063_02725759_02726399 NA other downstream 3195982 2725759 ~ 2726535 (-)
CI01000063_02326799_02327290 CBY1 other downstream 3594798 2326741 ~ 2327309 (-)
G265976 NA other upstream 362123 6283058 ~ 6290946 (-)
G266797 NA other upstream 1363460 7289495 ~ 7290224 (-)
G266660 NA other upstream 1513050 7439085 ~ 7441435 (-)

Expression


Co-expression Network