XLOC_010377 (lyplal1)


Basic Information

Item Value
gene id XLOC_010377
gene name lyplal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2637478 ~ 2650375 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020419
GACAACACGTGATGATAAACATGGCTGCGGTTAAACTCCAGAAGAGTGTTGTGAGCCAGGCTGGGAAACACACAGCTTCTGTTATCTTTCTTCACGGCTCAgGAGACACAGGGCCAGGCCTGCGCAGCTGGGTTTTGGATGTTTTAGGTCAAAACTTGGCATTTGAAAACATCCGGGTGATTTATCCCACAGCCCCACTCAGGCCGTACACACCCATGCGAGGGGCGCCGTCTCATGTGTGGTTTGATCGTCACAAGATTTCTCAGCATTGCCCCGAGCACTTGGAGTCGATAGATTCCATGTGTGATCATTTAGGTGACATTGTGCAGGATGAGCTCCGAGCCGGGATCCCAAAACACAGGATGGTTATTGGTGGTTTCTCCATGGGTGGAGCCATGGCGCTTCATCTGGTCTGCAGGCACCATCAGGACATTGCTGGCATCTTCTGTCTGTCCAGCTTCCTTAACAAAGACTCAGCGGTATATCAGGCAGTAGAAAATGCACAGCGCCCCCTACCTGAGCTCCTGCAGTGTCACGGCACATCAGACGAGCTGGTTTTCCATGACTGGGGCGAGAAGACGAACACGCTGCTGAAAAAAGCTGGACTCAATGCATCTTTCCATTCCTTCCCAGACCTCAACCATCAGTTGTGTCGACAAGAACTGGAGTTGCTTCGCTCCTGGATCCTGAATAAGCTTTCCATTTAAAGAgtgtcagtgctaaccactgaaccaccgtgccacCTTCATGGAGCTTttgatccatttaaaaaaaagtctcagtCACACTTGCATGGTTTAAAACAAAATGTCCACATGAAAATGCAAAAAGGCCCCATGAAGTGCTGTCAAGGTCATGCCAAAGCAACAGATGGCGCTATACTCCTAACCGTAAAGTCACGTTGGCCAATCAAAAGCTTCAAAAAAtagatattatttatatttttgatttcGGTTGGCTGTCAACATGACGTATGTCTGTTTGGAGTTCGGGAAATCGCTGCACATAATCTGATGTCATACAAAATAAATGAAGGTAGAACCAGACCAACAGAAA
>TCONS_00020420
GATAAACATGGCTGCGGTTAAACTCCAGAAGAGTGTTGTGAGCCAGGCTGGGAAACACACAGCTTCTGTTATCTTTCTTCACGGCTCAgGAGACACAGGGCCAGGCCTGCGCAGCTGGGTTTTGGATGTTTTAGGTCAAAACTTGGCATTTGAAAACATCCGGGTGATTTATCCCACAGCCCCACTCAGGCCGTACACACCCATGCGAGGGGCGCCGTCTCATGTGTGGTTTGATCGTCACAAGATTTCTCAGCATTGCCCCGAGCACTTGGAGTCGATAGATTCCATGTGTGATCATTTAGGTGACATTGTGCAGGATGAGCTCCGAGCCGGGATCCCAAAACACAGGATGGTTATTGGTGGTTTCTCCATGGGTGGAGCCATGGCGCTTCATCTGGTCTGCAGGCACCATCAGGACATTGCTGGCATCTTCTGTCTGTCCAGCTTCCTTAACAAAGACTCAGCGGTATATCAGGCAGTAGAAAATGCACAGCGCCCCCTACCTGAGCTCCTGCAGTGTCACGGCACATCAGACGAGCTGGTTTTCCATGACTGGGGCGAGAAGACGAACACGCTGCTGAAAAAAGCTGGACTCAATGCATCTTTCCATTCCTTCCCAGACCTCAACCATCAGTTGTGTCGACAAGAACTGGAGTTGCTTCGCTCCTGGATCCTGAATAAGCTTTCCATTTAAAGAGTCCTTAATTCTGGACAATGACCACGGaaccaccgtgccacCTTCATGGAGCTTttgatccatttaaaaaaaagtctcagtCACACTTGCATGGTTTAAAACAAAATGTCCACATGAAAATGCAAAAAGGCCCCATGAAGTGCTGTCAAGGTCATGCCAAAGCAACAGATGGCGCTATACTCCTAACCGTAAAGTCACGTTGGCCAATCAAAAGCTTCAAAAAAtagatattatttatatttttgatttcGGTTGGCTGTCAACATGACGTATGTCTGTTTGGAGTTCGGGAAATCGCTGCACATAATCTGATGTCATACAAAATAAATGAAGGTAGAACCAGACC
>TCONS_00020421
AGACAACACGTGATGATAAACATGGCTGCGGTTAAACTCCAGAAGAGTGTTGTGAGCCAGGCTGGGAAACACACAGCTTCTGTTATCTTTCTTCACGGCTCAgGAGACACAGGGCCAGGCCTGCGCAGCTGGGTTTTGGATGTTTTAGGTCAAAACTTGGCATTTGAAAACATCCGGGTGATTTATCCCACAGCCCCACTCAGGCCGTACACACCCATGCGAGGGGCGCCGTCTCATGTGTGGTTTGATCGTCACAAGATTTCTCAGCATTGCCCCGAGCACTTGGAGTCGATAGATTCCATGTGTGATCATTTAGGTGACATTGTGCAGGATGAGCTCCGAGCCGGGATCCCAAAACACAGGATGGTTATTGGTGGTTTCTCCATGGGTGGAGCCATGGCGCTTCATCTGGTCTGCAGGCACCATCAGGACATTGCTGGCATCTTCTGTCTGTCCAGCTTCCTTAACAAAGACTCAGCGGTATATCAGGCAGTAGAAAATGCACAGCGCCCCCTACCTGAGCTCCTGCAGTGTCACGGCACATCAGACGAGCTGGTTTTCCATGACTGGGGCGAGAAGACGAACACGCTGCTGAAAAAAGCTGGACTCAATGCATCTTTCCATTCCTTCCCAGACCTCAACCATCAGTTGTGTCGACAAGAACTGGAGTTGCTTCGCTCCTGGATCCTGAATAAGCTTTCCATTTAAAGAGTCCTTAAtgctaaccactgaaccaccgtgccacCTTCATGGAGCTTttgatccatttaaaaaaaagtctcagtCACACTTGCATGGTTTAAAACAAAATGTCCACATGAAAATGCAAAAAGGCCCCATGAAGTGCTGTCAAGGTCATGCCAAAGCAACAGATGGCGCTATACTCCTAACCGTAAAGTCACGTTGGCCAATCAAAAGCTTCAAAAAAtagatattatttatatttttgatttcGGTTGGCTGTCAACATGACGTATGTCTGTTTGGAGTTCGGGAAATCGCTGCACATAATCTGATGTCATACAAAATAAATGAAGGTAGAACC
>TCONS_00020422
cctaatgttggagcacatctgatcatttctggaagctgattcatTCAGGGGGCGTtgttagtagctgaagGTGGTTTCTCCATGGGTGGAGCCATGGCGCTTCATCTGGTCTGCAGGCACCATCAGGACATTGCTGGCATCTTCTGTCTGTCCAGCTTCCTTAACAAAGACTCAGCGGTATATCAGGCAGTAGAAAATGCACAGCGCCCCCTACCTGAGCTCCTGCAGTGTCACGGCACATCAGACGAGCTGGTTTTCCATGACTGGGGCGAGAAGACGAACACGCTGCTGAAAAAAGCTGGACTCAATGCATCTTTCCATTCCTTCCCAGACCTCAACCATCAGTTGTGTCGACAAGAACTGGAGTTGCTTCGCTCCTGGATCCTGAATAAGCTTTCCATTTAAAGAGTCCTTAATTCTGGACAATGACCACGGCTTCCTCATCACTTACACACAGTAACCAGCATTAACATGTTGTCATGTAATATGAATGCATTGAATAT
>TCONS_00020423
CGCGTGGTGTGAATCTCGCGAGACAACACGTGATGATAAACATGGCTGCGGTTAAACTCCAGAAGAGTGTTGTGAGCCAGGCTGGGAAACACACAGCTTCTGTTATCTTTCTTCACGGCTCAgGAGACACAGGGCCAGGCCTGCGCAGCTGGGTTTTGGATGTTTTAGGTCAAAACTTGGCATTTGAAAACATCCGGGTGATTTATCCCACAGCCCCACTCAGGTGAACCTCTGCGCTTACCCCTCAAACAGCGTTCGTGCTTGAAAATGGTTGAACTTCGAGGTTTTAAAAGtgcttgaaaatgtaattgtgctgtttttgcaATACTTTATCAAAGCATGTATTTAAAAACAGTTGTGATGGAAATAATATACTTGATTTCATCACTTTAGT

Function

symbol description
lyplal1 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

GO:

id name namespace
GO:0002084 protein depalmitoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-32 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1).

Ensembl:

ensembl_id ENSDARG00000088764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020419 False 1056 mRNA 0.47 6 2637478 2650354
TCONS_00020420 False 1043 mRNA 0.48 6 2637486 2650341
TCONS_00020421 False 1045 mRNA 0.47 6 2637491 2650355
TCONS_00020422 False 503 processed_transcript 0.48 3 2638359 2641494
TCONS_00020423 True 394 lncRNA 0.44 2 2647513 2650375

Neighbor

gene id symbol gene type direction distance location
XLOC_010376 adcy3a coding downstream 78825 2515223 ~ 2558653 (-)
XLOC_010375 wdr26a coding downstream 133473 2482498 ~ 2504005 (-)
XLOC_010374 hpxb coding downstream 223415 2394193 ~ 2414063 (-)
XLOC_010373 hace1 coding downstream 246547 2351520 ~ 2390931 (-)
XLOC_010372 NA coding downstream 688409 1948025 ~ 1949069 (-)
XLOC_010378 CU929110.1 coding upstream 85301 2735676 ~ 2735799 (-)
XLOC_010379 tgfb2 coding upstream 94631 2745006 ~ 2807527 (-)
XLOC_010380 NA coding upstream 159342 2809717 ~ 2812008 (-)
XLOC_010381 acot22 coding upstream 163858 2814233 ~ 2818170 (-)
XLOC_010382 cdcp1a coding upstream 197190 2847565 ~ 2870522 (-)
XLOC_010626 CR392024.2 misc upstream 18244737 20895112 ~ 20895175 (-)
XLOC_010369 NA non-coding downstream 1284472 1350971 ~ 1353006 (-)
XLOC_010368 NA non-coding downstream 1418908 1204142 ~ 1218570 (-)
XLOC_010366 NA non-coding downstream 2084851 551682 ~ 552627 (-)
XLOC_010364 NA non-coding downstream 2270334 354846 ~ 367144 (-)
XLOC_010384 NA non-coding upstream 697631 3348006 ~ 3348709 (-)
XLOC_010386 NA non-coding upstream 1134499 3784874 ~ 3796633 (-)
XLOC_010388 NA non-coding upstream 1528661 4179036 ~ 4179967 (-)

Expression


Co-expression Network