G266817



Basic Information


Item Value
gene id G266817
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7351818 ~ 7352264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU302846
TATTAAAAGATGGAATCCCAGCTGGTGTATAGAGCCATGGTCTGTTAGACATCATGGCTCTTTTATTTCCAGCATGTGTTGTCTGAGTGGCCTAGGGTTTAATGTGCTTATTGATTGTGCTCCCTGTAGGGGTGCATTTTGGGATTGACTGGACACACAAATGTTGTACTGTAAGGCTCATATTTGAATGCACAATGTATTAACTCATTGTGCTAAATTGTTATGCAGCACACAAGTGCATGCAACATTAGCCTGTTTAAATAAATCTGTTTAATATGAAAATTTCTAATGTTGTTTACAATGAGACAACATTGTATTATTGTACATAAAGTTTTTTTTTTAACAATCTGAAAAAACAGCTATGTTACAGCAACTATTGCTGAAGCCAGTTTGAAGATCAGTACATGCTTAAAGTGTTAGTTCACCCAAAAATGAAAATAATGTCAT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU302846 True 447 lncRNA 0.35 1 7351818 7352264

Neighbor


gene id symbol gene type direction distance location
CI01000063_07217465_07224133 NA coding downstream 127496 7216986 ~ 7224322 (-)
CI01000063_07205887_07209986 NA coding downstream 141147 7205855 ~ 7210671 (-)
CI01000063_07147043_07192035 MYO1D coding downstream 159783 7146006 ~ 7192035 (-)
CI01000063_07114269_07117313 PSMD11 coding downstream 234020 7113407 ~ 7117798 (-)
CI01000063_07092189_07106801 OGFOD3 coding downstream 244063 7092090 ~ 7107755 (-)
CI01000063_07356051_07365604 OSBPL7 coding upstream 3738 7356002 ~ 7365604 (-)
CI01000063_07369762_07372353 MRPL10 coding upstream 17448 7369712 ~ 7372353 (-)
CI01000063_07377062_07377408 PRR15LB coding upstream 24069 7374771 ~ 7377408 (-)
CI01000063_07394616_07396752 NA coding upstream 42352 7394616 ~ 7399019 (-)
CI01000063_07411237_07413430 NA coding upstream 57911 7410175 ~ 7413430 (-)
G266818 NA non-coding downstream 181 7351337 ~ 7351637 (-)
G266808 NA non-coding downstream 19204 7332339 ~ 7332614 (-)
G266795 NA non-coding downstream 69560 7281932 ~ 7282258 (-)
G266677 NA non-coding downstream 75253 7266521 ~ 7276565 (-)
G266772 NA non-coding downstream 126401 7225217 ~ 7225417 (-)
G266669 NA non-coding upstream 84533 7436797 ~ 7438252 (-)
G266685 NA non-coding upstream 112205 7464469 ~ 7467147 (-)
G266827 NA non-coding upstream 128370 7480634 ~ 7480877 (-)
G266647 NA non-coding upstream 159672 7511936 ~ 7515695 (-)
G266797 NA other downstream 61594 7289495 ~ 7290224 (-)
G265976 NA other downstream 1060872 6283058 ~ 6290946 (-)
CI01000063_05616519_05617045 NA other downstream 1734706 5615806 ~ 5617112 (-)
G265567 NA other downstream 2097878 5183279 ~ 5183287 (-)
G266660 NA other upstream 86821 7439085 ~ 7441435 (-)

Expression



Co-expression Network