G266647


Basic Information

Item Value
gene id G266647
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7511936 ~ 7515695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU302660
TTTTTGTATAAGCACAATTTATTTTCATTTATGGAGGGTTTCTTTTGCTCATTTTACACCAGACAACAGACTAACAGACCAGTAAAGAATTAGCTATGCACAAAAATGCAGTCATGCTCAGAGAAAGAAAACCTTTATTTATCATTCACATGAATATTATGACCAATTGAGCATGTCAAATATTATGGAACTCTTCCGGAGATGTGAAAAGCTTAAATATCTGCCTTATAATGGGTTTTCACAAAAGGACTTGCACAGGATCTTTCTGCAAAAAGAAAAACGCTACAGCCGAATTTAAACAATCAGTCAAATCAAGGTGTTACACAGGAGCAATCAGGAGAATACTGGAAACAGCCAAGCACTCTGCACCGCAACACGCCACCTTAACAGCTAACCAGCAAAACTCAACTGCTATGCAACTGCGCCTAGTGCATAGAAAATACACAAGAGAGAATATTAGAATCATGTTGTGAAATTTCCCATTTAAACCATAACATCTGCTTGGTTAGCAATTATGTTATGGTTTTACATAGTAAGATTTCTTAAGAGGCCAAATTACAGTCTGTAGTACCCAGTCCTTTAGGGTCAAAGAAATATGCACAACATCCAGAATTGTCCATTAATGTTTATTAAGAACAAAAAACCTGATTAAAATGAACTTACTTTATAGTCTGGGAGTTTCAATAACATGAAGTAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAACAAAACTACCAAAAATGAGAAAGGATTTCAACTAGTAGCCCCATTTAGGCATAAAGATCATTTAATATCACAGAATTCAAATGTATGATACAAAACAATTGTGGGCAACAGAAACAAGCAATTTAAAAGATTTAGACCAAATTACAATAACCTTTCGGTCTGATATATGGATAATTTGGGTATCCTCAGACGGACATCTGTTCGATGCGATCCTCAAAGAGTCAACCAGTTGACATCATCTAGAAGAAAAGAATAATAAAGTTAGTTTCAAAGAGCATTAAAGCAGAGGAGGTTCTACAATAATCGCCATAAAACAAAGCATTGCATATTACGCAATGCTCGACTTTGGTCATCAGTTACACAGAACAAACAGGCACTCTTTCCACACAAATAACTAACCATGTTTACATGAATCTATGGACCTGGTTTTTGTTCTGCAAGAAACCTTGTGTACCTGATATTTGTTCTGCGAGAAACCTCAAGGGAAGAGAGCCAACAAACCTGAGGGTGAAATATGAACTTCTCAAAGCCACTTTAAGTGTCGGCAAGCTGAGGTATATCTCATTTACCGCCAGTTAGAATAGTAATAAATAGCCAAATAAGTTAATTAGGCCTATATCAGACACCCAGCAGCCTGACAGCTTAAACTCTGGCTCTGAGAACACACCCGTATCCATCCCATTTTTGCCTATGCCACGATAGACATGAGTTTGTGACAAGGATGATGGAAAGGTCTCAGTCCATTGTCCTGCAGACGTACCTCAACACCACCTCAACACTCAATGAGACCGACCTGCTCCATAGCAACCGCCAATCAGCAGCAGGCAGCCAATGGACGGATCACACACTAACTGCTCTCAAACTGCCCCAAACTCCTCTTTTGCAAACAGGAATCAGCAGCTTGGAGGAAAGAATTCCACATTTAGATGAAATCAATGGATTTTGGCTGGTACACGTTTCAAAACAAACACATACTTACGGTATTGTACCCAAGACAGCTCCAAATCAAATATCCATGTGAGGTTTAGGGCGTGTATTAAAAATTAACCTTTAAAAGTCATGCAGATTCAGAGATACCAGACAGATGCTGTGAATAACAGCTACTAATCAGGCTAAACTTGAGTAAAACCTGGCACCTCCATTAAGATAATTTATCTACCGTTCTGCTGCATCTGCAGATGTCTTGAAGGACTTGATGAAAGAGTAAAGTAGAGGGGCGAAACGTACAATATATTTCATATTTTAAAGCAGCCATTTTGTTATTAAAATAAATGCATGCCTTCACTTTCCCCACTTAAGGCATGAGTTTAAGCTGTTCTGCTCAAAAATCAATCAAGTTTAGGATTTAGGATATTTACCAAAAAAAAACGAACTGAAAGACGCACTTGTCATCAGAATTATTGGACGACAGTAAAAATGCCCCCAGTTGCAATAAAATTAATCATCTATACAAAGCATTAGACTCACCTACATTTCACGATTCAGCAGGGGCTCCAGTATCCTCTGGAGACTTGGGTCTGCTTCTCGATCTGGATCTTGATTTGGATCCTTTGTTTGATCTGGGAGTAGGACTCCTGGAGCGAGACTTGGACTTAGACCTTGAGCGGGACCTGGAAGCTGATTTGGACTTGCTTCTGCGTGGTGTGCGGGTTTTGGAACGGGACCGAGACCGGGAACGGGAGTAGGACCTTGACCTGGATCGGCTGTAACGAGATCTGCTACGGGAACGGGACCGGCTCCTGCTCCTGGACCTGCTGTGCCTCCTGCGCCGGGGACTACGGCTGCGGCTTCTCCGTCCATGTCCCCCGTACCTCCTCGGCGGGGCTCCACGGCGGCTGTAGTGCGAATCTGGCGGGCGCCCGTATCGCGCCATTTGCACGCGCAGCTCGCGCCCATCCAGCAGCGCGCCATCCATGGCGTCCATTGCGTCCTCCGCGTCCCGCTTATCATGGAAACGGACGAAGGCGAACCCGCGACTTTCTTTCGTGTATCGGTCTCTCGGGATGTAGACATCGCCGACTCGGCCGTACTTCTCGAAAACCCGCCGCAGCGTTTCAGGGGACGTGCGGTAAGTCAGATTGTCGACTTTTAAAGAAGTCATGCCCTCGACATCGGGCGGAGGTCTGCCGTAGCTCATCTTGAACTACTATCTCTACTACAGTATGTTATGCGAAAAAAATACGGTTTCTATCGAGATTTAGACGGAAAATAACGAACCATTCGGGAGAGTCGAAAGTAACACGCCGCGCGGTTTTCACTCTAAAATGGCTGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302660 True 3003 lncRNA 0.43 2 7511936 7515695

Neighbor

gene id symbol gene type direction distance location
CI01000063_07493274_07509323 RNF157 coding downstream 2613 7493012 ~ 7509323 (-)
CI01000063_07483274_07486490 NA coding downstream 24318 7483102 ~ 7487618 (-)
CI01000063_07458562_07458738 NA coding downstream 53082 7457815 ~ 7458854 (-)
CI01000063_07450175_07455382 ZNF646 coding downstream 56351 7449162 ~ 7455585 (-)
CI01000063_07424567_07426570 NA coding downstream 85366 7424361 ~ 7426570 (-)
CI01000063_07516671_07521503 NA coding upstream 751 7516446 ~ 7521861 (-)
CI01000063_07525686_07551770 DNMBP coding upstream 9991 7525686 ~ 7551770 (-)
CI01000063_07578043_07590189 CPN1 coding upstream 62281 7577976 ~ 7590691 (-)
CI01000063_07605652_07611233 NA coding upstream 89918 7605613 ~ 7611233 (-)
CI01000063_07619266_07636507 GPAM coding upstream 103405 7619100 ~ 7637052 (-)
G266827 NA non-coding downstream 31059 7480634 ~ 7480877 (-)
G266685 NA non-coding downstream 44789 7464469 ~ 7467147 (-)
G266669 NA non-coding downstream 73684 7436797 ~ 7438252 (-)
CI01000063_07377062_07377408 PRR15LB non-coding downstream 130601 7374771 ~ 7377408 (-)
G266817 NA non-coding downstream 159672 7351818 ~ 7352264 (-)
G266833 NA non-coding upstream 7023 7522718 ~ 7522990 (-)
G266670 NA non-coding upstream 76759 7592454 ~ 7592720 (-)
G266846 NA non-coding upstream 173157 7688852 ~ 7689102 (-)
G266660 NA other downstream 70501 7439085 ~ 7441435 (-)
G266797 NA other downstream 221712 7289495 ~ 7290224 (-)
G265976 NA other downstream 1220990 6283058 ~ 6290946 (-)
CI01000063_05616519_05617045 NA other downstream 1894824 5615806 ~ 5617112 (-)
CI01000063_05189361_05189645 CRIPT other downstream 2321319 5188403 ~ 5189645 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding CM030125.1 CM030125.1 18261963 ~ 18265695 (+)