XLOC_010382 (cdcp1a)


Basic Information

Item Value
gene id XLOC_010382
gene name cdcp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 2847565 ~ 2870522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020427
CTGGAAGTCGCGAAAACCAGGAAGAAGCTGCTTTATCTCCTCTGAGGAAAACTCGCGTCCATGGCGGACTCTTTATTACACCTCTTTAACCTACTGTAAGGAGTTTACTGGATATTTAAAAAGCCATGCGAAGTTGGCGTGTGACCTGCTTTTCGCTTGTTTTGCTGGTGTTTTTCCTCTCGTCAGTCCTGGAGCTCACAGGTGGAGCTGAGCTCAACGTTGCTGTTGAACAGGGCACAACCATCCTCATCAACACAAGTTCCAGCACAAGCACACAGTGTAAAGTGTGTATGAGAGTGCGAAACCAGCCCTTGTGCCAGGCTTATGTGGTCCTCAGAAGTGATACGCTTTTGGATTTCAGCTGTTCGCAGCCAGAGAAAGTGTTTATTGTGCAGATCATCAGAGACACGGGGACAATGAACATTGAACCCAAAGATCACAGTGCTTTTATAAAGTTTAATCGCACGTTCACCTGGAATCTGAAGCCTTTAGTTTCAAAATCCCTCCAGTTGAATTTCAGTAGCACGGGTTTACGACAGATTGAGCCTGAGGACAGCTGTCCTGACAATCACAGATACATACTCGCGGTGGAGAACATCAGCATCGGGACATTTTGTCAGAATGGAGTCATCAGACAAATTGACGTGCGTAATGCTGGAAAACTGTCTGCGGAAGTGACTGGAGGTCAGAGTCTAAGCATGAAAGTCATCGCTGTATCAGTGGGACGTTTAATGAACTCTCTGGTTAACATCCATGCTGTTCTCCCAGAGAAGAGCTCAATCCAGGACTTCATAACACCAAACACAACCCCTGAAAATGCAGAGATCATGTGGTTTTTCAGCATGCCCAATGCATACTATGCAGACGTACGCATTCTGAAGTACACTCTTCCAACATGCCTGTCGTCTGAAAGCATCCCTACAATGAAGTACACCTGGCAGGGCAGGGATGCTCTGGTCAAGCGTATGAATGAAAACCAGCCGTCAGTGGAGCCTGGAAACTTTAACATCTCCATAAAGAACTGCAAAATGTCCACGGTGTCTTCATTGAACAGATtgatggtgcactttcagatctCTGCCATCAAGAGAAGGAAGGGCCAGTGTGAAGGAGATCTGCCAGACAAGCAAGTACTGAAGATACAAGTAATGAAAAAGGATCCCAAGTCGGTCTGTGTGTTGAAACTGGATTCGGTCATAATGGACACAGTCACCATCGCTTCAGGGAACCATTTTATTCTTAATACCTTTGACTGCAACAAGGATGAGCTGGAGTTAACTGTAATCCAGACTGAGGAATGTAAAGAATGGAGGAACTGTACATCCACTCTGTTCCCGCTTCACTTCAATTATGAGCAGCAGTGTATCCCAGGAGTCCTGAAGATGATCACGTGGTACATTCAGGGTCCAGTCAACAGTGCAGTGGAGCTACAGTCTCCTACAGACGGCCTGCGCTACTGTTTGCCTGAAGACAATTGCAACAGCATCCTACTGCTAAACGTCTCCCAGGTTATGAACCCAGGCACCACTGTTGGCCAGTTCTGTCCAAAGGGATCCGTTCAGAAGATACAGATCCGGGAGTCCAAGATTGCAGTAACTGCTTCTGTTACAAGTTTCAGCGACCGGAGTGTGGCAGCAAAACCAATCTTAAGCTATTCGTTCACACAAGGCATATCGGAAAACTACATATTCAGTGTCACACCAAAGATGGATAATCCTACCACGCTGGCGACCCCAGGCTGGCCGTCTGCAATGAAAGCGTCCAGCACAGTGTCCTGGATAGTGAACATGGAGCCGCAGTATACAAGCGTGCTGACATTCAGAAATGTCAGTCAGCCCAAGTGTAAACAAGTGCACACAAACATCGCAGTGCAGACCATTCGCTCTCAAACGGTGCTGTACACCACTACAAAAGATGATAAGATGAAGGATCTCCTGCTGCCAGAAGGTTTTTACCTCAACATGACGAACTGCAAGTCACCGACAGGAGCCTTCAGGGCAATGATGGAGGTCACGGTGCAGAGCAACACAAACAAGCTTCTGGGCATCATCCTGGGCGTTGTGGGCGTTGTGTTGGCCATCGCAGTAGCTGTGGTAATCTGGTTTGTTCTCAGGAAAAAGAAGAGGAATAAGGCTCCCCCGGTGTCCGTGTACAACCCCAGTGAGCACGCCTTCCTTCCAGGCTTACATGGCATCCCGAAAACACAAGAGGAGGATGAGGAGAACCACACGTACGCATACATAGATGACACTCTGGTGTACAGCCATCTGCTTAACGATGACGCTGACAATAAACAGCATTATGAAGACACCTCCGGCCCACATCTGAATAAACCGCCGTTACCGGACAGACCAGACAGAAACGTGGACAGTCACGCTCTAGACAAAGCATTGCTTCCCAATGAGCTGTACGGGTATGTGCAGGGGCAGTCAACTACATCTGGACCAACAAGAACATCAGGCAAAAGCTCTGAGGAGCACACCTATGAAACCAGACTCTGTGTGTGACCGAGAGCTTTATGAAGACGTTTGACGTTTAGCGATGTTTTGCGTGAGcagattgctttttttttttaaaaatgactgcaTGCTTTTGATATTAAAATGTCTGTTCA

Function

symbol description
cdcp1a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CDCP1 (CUB domain containing protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-55 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CDCP1 (CUB domain containing protein 1).

Ensembl:

ensembl_id ENSDARG00000058943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020427 True 2614 mRNA 0.47 9 2847565 2870522

Neighbor

gene id symbol gene type direction distance location
XLOC_010381 acot22 coding downstream 29395 2814233 ~ 2818170 (-)
XLOC_010380 NA coding downstream 35557 2809717 ~ 2812008 (-)
XLOC_010379 tgfb2 coding downstream 40038 2745006 ~ 2807527 (-)
XLOC_010378 CU929110.1 coding downstream 111766 2735676 ~ 2735799 (-)
XLOC_010377 lyplal1 coding downstream 197190 2637478 ~ 2650375 (-)
XLOC_010383 csf3r coding upstream 232660 3103182 ~ 3127749 (-)
XLOC_010384 NA coding upstream 477484 3348006 ~ 3348709 (-)
XLOC_010385 GRIK3 coding upstream 593205 3463727 ~ 3678976 (-)
XLOC_010386 NA coding upstream 914352 3784874 ~ 3796633 (-)
XLOC_010387 si:ch211-175f12.2 coding upstream 1140445 4010967 ~ 4031386 (-)
XLOC_010626 CR392024.2 misc upstream 18024590 20895112 ~ 20895175 (-)
XLOC_010372 NA non-coding downstream 898496 1948025 ~ 1949069 (-)
XLOC_010369 NA non-coding downstream 1494559 1350971 ~ 1353006 (-)
XLOC_010368 NA non-coding downstream 1628995 1204142 ~ 1218570 (-)
XLOC_010388 NA non-coding upstream 1308514 4179036 ~ 4179967 (-)
XLOC_010390 CU469524.1 non-coding upstream 1339955 4210477 ~ 4211935 (-)
XLOC_010391 CU469524.2 non-coding upstream 1364205 4234727 ~ 4267736 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000065_03344678_03368295 NA coding CI01000065 null 3344331 ~ 3368472 (+)