CI01000065_00408239_00434714


Basic Information

Item Value
gene id CI01000065_00408239_00434714
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 408148 ~ 435407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00408239_00434714.mRNA
CTATAAATAAAGGACTCCTGGAGTCGCATTTCCTACTCACACACGACAGAAACAATGTTCAGAGTATTAGATGTATTCTAAGCATACCACAATGAAGAAACCTTCAGCAGATGGTCAGATGAAAAATTCAAAAGACGTACCGAATCTTGTGGAAATCCTAAAATATATGCAATTTGATCAAGGCAGGATTAAAAGAGCCATTGTGCTTGTCAATAAGCTGTTTACCGCCGCCCACGAGCTGCCTTCAGCATCTGAGAGCACTCGTTTCAGCTCATCCCCTGCCGTCTTCCGTCAGCTGTGGGGTTCCCTTGGAGGCGGTTTCCAGAAGGATGACAGGGGACGCCACGTCTTGGTCCGATCAGACCGCATGACGGTGGTATCCTACATAAATCACCAAGGCGGCCTTTCATCCAGTCGCCTCTGCGCGCTGGCAAAGCACCTCTTGGAATGGGCACTGCCCAGGCTGCGATTGCTCAGAGCGTCGCACACACAGGGCAAATTGAATCTGGGAGCAGATATGCTATCTCGGAGCAATGTCCCCTCAGACGAGTGGATGCTCCATCCCCAGACGATTCTCGAAATCTGGGAGATCTTCGGGAGGGCAGAGGTCGACCTCTTCACCTTAGAAGAAAACTCTCATTGCCCAATCTTCTTTTCGAAGGACACAGATGCACTGGCCCACGACTGGCCCAGCATCCTTCTTTATGCTTTTCCCCCTATCAATCTGATACCTCAGGAGCAACCAATGCAACCCCTAATTGCAACTGTTTCTATTTATTACAATCTCTGGAAAACCACAATCTTTTTCTTTGTGATGGTATGTGAGATTCGGCTGGTTGGACTACAGCAACAGCACATCAGTGGTAAACTGGCCTCTTACAGGCAAAGTCATCAGCCCAATGGCAGCGGAGGATTGGAGCTTAAACCAGCATCTTGGGCTGAAGAATTGTTGGATCACACACACGAGGGAACAACGAGGGATGGCTTAGATGACGTGATGACTAGAGAAAGCAGTCTGTAGCATCTGACGAGGTCAGACACTGACTGAGGGAGTGTGTGTGTGCTCTATATAGTGCTGGTGATGAGGGCTAGATGAGTTTCAGGTGTGCATGGTTAGGTTCCAAGGAGGACGCTCTGAAATGCAGTCCGTGACATTACTCCCCCTGCCTGTACGGCGGCTCCAAACAACTTCAGGGGCATGAGAATAAGTGGAACTCTGCTCCACGGTGTCAAACTCCACCAGCACTCCCTCAGGGATGATTCACTGCATCTTGGATTGATGCTATTGGGAACAGATACCCACTTCAGGAATGCCTGCCTCACTAGGTGGGAATAGGTGAAAAAAAGACTCTTGTCCACATACTCCAACCTCAGGGAGGTCACAGGGGAGTTATCCCTTACAAAAGATTACTGCAGTTTTTACATATAGAAAAAAGCATTTTTTTTTGGACACGAAAAAACTGCGATATTGCAGTATAGCTGCAATACAACTGCAGTTTTACTGCTGTTGAACTTCAATGTACTGCAGTTGTACTGTGATTATACTTCATTATACTGCAAATCTATGGTTGTGCTTAATTATATTGCAGTTATACTACTTTGTACTGCAGTTTTACTGCAGTTGTACTTCAATATACTGCAGTTCTTTTTTGTAAGGGATTCCCCACTTAAAAACCCCAATACACTGGGGGAGAGCAGCTCAACCCTGACTTAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00408239_00434714.mRNA True 1714 mRNA 0.47 8 408148 435407

Neighbor

gene id symbol gene type direction distance location
CI01000065_00390457_00395371 SALL3, SALL3A coding upstream 11997 390457 ~ 396151 (+)
CI01000065_00268067_00268655 NA coding upstream 139360 268067 ~ 268788 (+)
CI01000065_00008351_00023809 NA coding upstream 383810 8351 ~ 24338 (+)
CI01000065_00001128_00004874 NA coding upstream 402964 1128 ~ 5184 (+)
CI01000065_00466096_00487259 NA coding downstream 30569 465976 ~ 487278 (+)
CI01000065_00491304_00503042 NA coding downstream 55741 491148 ~ 503458 (+)
CI01000065_00506921_00509678 NA coding downstream 71514 506921 ~ 510257 (+)
CI01000065_00517483_00553268 ZNF236 coding downstream 82076 517483 ~ 553738 (+)
CI01000065_00581819_00588773 NA coding downstream 145468 580875 ~ 588779 (+)
G267248 NA non-coding upstream 40480 367465 ~ 367668 (+)
G267245 NA non-coding upstream 43484 364456 ~ 364664 (+)
G267231 NA non-coding upstream 55672 352125 ~ 352476 (+)
G267210 NA non-coding upstream 76589 331182 ~ 331559 (+)
G267199 NA non-coding upstream 87278 320604 ~ 320870 (+)
G267336 NA non-coding downstream 855 436262 ~ 436600 (+)
G267438 NA non-coding downstream 72775 508182 ~ 508413 (+)
G267441 NA non-coding downstream 76283 511690 ~ 512132 (+)
G267454 NA non-coding downstream 155608 591015 ~ 591219 (+)
G266932 NA other upstream 363482 43038 ~ 44666 (+)
G267432 NA other downstream 346876 782283 ~ 782879 (+)
G267577 NA other downstream 646746 1082153 ~ 1082655 (+)
G268525 NA other downstream 1803752 2239159 ~ 2239998 (+)
G268805 NA other downstream 2173500 2608907 ~ 2638205 (+)
G269181 NA other downstream 3023550 3458957 ~ 3462928 (+)

Expression


Co-expression Network