CI01000065_00506921_00509678


Basic Information

Item Value
gene id CI01000065_00506921_00509678
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 506921 ~ 510257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00506921_00509678.mRNA
ATGGCGAAACAGTTCAGTCTTCAGGAGACTCTGGATTATATTTTAGACTCTAGTGATGGTGAAGATGTGGCAGATGCTGAATCAGAGGACTTTGATGAAGCTTCTGAAACAGAAGACCACCTAGAGCAGGACCAAGATCACAACGAAACTGATGAGGAAAATTCAGATGACGAGGATGCTGATGAGGAGCCAAACACTTACCTCTCTAAAAATGGAAGAGAGAGACAAGTTTTTGCTAATGAGTGGACGGATCTGGATTTGGCAGACATTCAGGCCTATATTGGTCTTGTCATTCTCGCTGGGCTTTACTGCTCCAACAATGAGGCCCATGGCAGGTTTATGTCATTCAGATTCCAGAAGTCATGTCTTTGGAGACCTTCAGGAAAATTTCAAGGGTCATCAGGGCTCTGTCCATTTAGACAGTACATACCCAGTAAGCCTGCGAAATACGGCATCAAAATTTGGGCGGCATGCGATTCGACAACAAGCTATGCCTGGCAGGTGCAAGTTTATACGGGCAAGTCTGTGAGTGGGCAGCAAGAAAAGAACCAGGGGATGAGAGTTGTGCTTGATGTCACCAAAGGCCTGCGGGGTCACACAGTCTTCCCAGGAGCTGCTAAAGAGGAGGCTTACAATGAGACACAGTCCCTTGTTTCTTACTGTCCCAAAAAAGGTAAAACTGTGCTTCAGCTTAGCACACTGCACAGGGACAGCTCAGTAAGCAGCAGAGATGACAGGAAGCCACTGATGATCCTGGATTATAACAAATCCAACGGAGGAGTGGACAACCTGGATAAGATCAGTCTGGGTCTGTCAACTCTTGGCATTAAGAGGAGTCTGTGTGTCCTTTACCATCCACAAACACATGGTCTGGTGGAGAGATTCAATGGCACAATCAGATGCAATAAACAGTTCATTTGAATATAAATGCCAATAGAGCCTTATTCAATTTGTCTGTGTGTATTTTAGGTCTTTGAGCAAGTCGGTGAAGAACAGGTCAATCGCGTGGGCTGAATATTTGAAGGCCACAATGTTTGTTCCACGTACCAAAAAGCAGATAACAACCACACTTTCCCCTTATCATCTGCTCTCTGGTCATGGCGGTGCCCATGTGATGTACCAGATACCTGTGAGGAACACAATTATGCATTATATCACAGTTAAACATTCAAAGTGTCAACATTGTCTTGATCATCATGTGTGGATGATTTGCCTCTTTATTGTAGATCAATGACAGTGTGTAGGACATGGTTTCAGAGGAGGGCATTCCTTAAACGGCAGGACCGGTTGTTCCAAATTGTTCAAGACAATATGGCGTAGGTGTGAAGGAAACTAATACAGAGGAAACTGGAAAAAGGAAAGGCTGATGTCATGCAGGTTGGGGACAGTTTGATGACAATGGCAAAATATTTCCCAGGGTAAACCTTGATCACCTGGTTCACTTTTTAAAAGATCTCTATAAAGGGGCAATCGTGTCTTGTCCGTGTACACATTTTGTAA
>TU303499
GTCACGGTTGATGAGAGCCTGGTGCTGTTTAGAGGGCTCTGTCCATTTAGACAGTACATACCCAGTAAGCCTGCGAAATACGGCATCAAAATTTGGGCGGCATGCGATTCGACAACAAGCTATGCCTGGCAGGTGCAAGTTTATACGGGCAAGTCTGTGAGTGGGCAGCAAGAAAAGAACCAGGGGATGAGAGTTGTGCTTGATGTCACCAAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00506921_00509678.mRNA False 1500 mRNA 0.44 5 506921 510257
TU303499 True 214 lncRNA 0.50 1 507586 507799

Neighbor

gene id symbol gene type direction distance location
CI01000065_00491304_00503042 NA coding upstream 3463 491148 ~ 503458 (+)
CI01000065_00466096_00487259 NA coding upstream 19643 465976 ~ 487278 (+)
CI01000065_00408239_00434714 NA coding upstream 71514 408148 ~ 435407 (+)
CI01000065_00390457_00395371 SALL3, SALL3A coding upstream 110770 390457 ~ 396151 (+)
CI01000065_00268067_00268655 NA coding upstream 238133 268067 ~ 268788 (+)
CI01000065_00517483_00553268 ZNF236 coding downstream 7226 517483 ~ 553738 (+)
CI01000065_00581819_00588773 NA coding downstream 70618 580875 ~ 588779 (+)
CI01000065_00605004_00618190 ARHGEF2 coding downstream 94154 604411 ~ 619124 (+)
CI01000065_00625575_00629127 EAF1 coding downstream 115318 625575 ~ 629294 (+)
CI01000065_00633526_00695106 BBS9 coding downstream 123269 633526 ~ 695106 (+)
G267336 NA non-coding upstream 70321 436262 ~ 436600 (+)
G267248 NA non-coding upstream 139253 367465 ~ 367668 (+)
G267245 NA non-coding upstream 142257 364456 ~ 364664 (+)
G267231 NA non-coding upstream 154445 352125 ~ 352476 (+)
G267210 NA non-coding upstream 175362 331182 ~ 331559 (+)
G267441 NA non-coding downstream 1433 511690 ~ 512132 (+)
G267454 NA non-coding downstream 80758 591015 ~ 591219 (+)
G267455 NA non-coding downstream 81265 591522 ~ 591883 (+)
G267457 NA non-coding downstream 120979 631236 ~ 631444 (+)
G267550 NA non-coding downstream 482025 992282 ~ 992724 (+)
G266932 NA other upstream 462255 43038 ~ 44666 (+)
G267432 NA other downstream 272026 782283 ~ 782879 (+)
G267577 NA other downstream 571896 1082153 ~ 1082655 (+)
G268525 NA other downstream 1728902 2239159 ~ 2239998 (+)
G268805 NA other downstream 2098650 2608907 ~ 2638205 (+)
G269181 NA other downstream 2948700 3458957 ~ 3462928 (+)
G267438 NA non-coding downstream 383 508182 ~ 508413 (+)

Expression


Co-expression Network