CI01000065_00517483_00553268 (ZNF236)


Basic Information

Item Value
gene id CI01000065_00517483_00553268
gene name ZNF236
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 517483 ~ 553738 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00517483_00553268.mRNA
ATGGAGGTCAGGAAGCTGGATCAGAGAACCAGAAGCCTGCAGAGAACAAATGTAATATTTGCTCCCAGAATTTCCCCAGCGAGAGTCAACTTCAGAGACACCTGCGAGAGCATGAGCCGTATCGCTGTGACCAGTGTCCGGTGTCCTTCAATGTGGAGTACAATCTTGGCCTTCATAAATCCACTCACACCACTAGCGAGCCCAAATGCCCCGTGTGCCATAAGAAGTTCTCAAGAGTGGCCAGTCTGAAGGCTCATGTCATGATCCATGAGAAAGAAGAGAACTTCCTGTGCTCTGAGTGTGGAGACGAGTTCATCCTGCAGAGTCAGCTCTCTCTGCATCTGGAGGAACACCGGCAGGAACTCAGTGGAACGAAGTCGTACACCTGCAAGACCTGCAGCAAAGAGTTCTCGTCGCAAAACCAGCTGAAAGAGCATTTGAGAAGCCATGCCAAGATCAGGCCTATTATAACAAGTTCAAGGAACTACAAGAACATTGATCGGAGAGGATTCAAGAACATTTGCCACCACTGCGGGAAGACGTTTAAGAAACCCAGTCAGCTTGTGCGACATATACGCATTCACACAGGAAACCTGCATTCGCACGTTCAGAGAGTTCACTCACAGGCGGCTGGTGCTCCACTCTTCCCATGTATGGACTGTAGCTGCGTCTATAAAAAGCTTGGCAGCCTCAATGCTCACATCAGCAAAATGCACATATCAGTAATGGAAGTTGAGGAGCCAACAACACAGAAAGGAAATGCAAGGGTTGATCAGGGTCCTGTGGGCTCGGAAGGGGCGGAGGGTGTGACAGATGTGATCCAACAGCTGCTGGAGCTGTCTGACCATGTGACTGCAGACAGCGCTCAGGCCCCTCCCCCTGGGCAAGCCATAGGCACGGCCATCAACCAGGACATCCTACAGCAAGCTCTGGAGAACAGTGGGCTGACTGAGATTCCAGTTCAGCCTGAAGCTCAGAGCGGCTCAGAGAAGCTTCAGACGGACACAGTCACCCCGACTTCAGCAGGCGATGGACCGGCGCCCTCCAAAATACTCATGACCGACACCGTTGTCAAAAAGGAGAAAAGAAGCATTATCAAAAAGCCTCCACAGATGCTAGGCACCATCAGGCAGGAGAATGGGGTGAGGTGGCATGGCTGTCCCTACTGCTCCAAAGAGTTCAAGAAGCCCAGCGACCTGGTGCGTCACATCCGCATTCACACTCACGAGAAACCCTACAAGTGCAAGCAGTGCTTCCGTGCCTTTGCGGTCAAGAGCACCCTGACCGCCCACATGAAGATCCACACCGGCATTAAAGCCTTCGAGTGTCCGTACTGCATGAAGTGTTTCTCCACATCTGGGAGCATGAAGGTTCATCAGCGTCTTCACACCGGTGTTCGGCCGTTCCCTTGTCCTCACTGCGAGAAGTTCTTCCGTACATCCGGCCACAGGAAAACTCACATCACCTCTCACTTCAAGAGTATCCACCATAAAAAACACAAGTTCCCCCGAAAACCTCACAAAACCAGAGTGTCCCGGAGCAATCTGCCTTTGCCTGATATACCTCTCCAAGAGCCCATACTCATCACAGACATGGGACTCCTGCAGAACCAGAGCTCACGGGCTGCCCTGCAGCAGTATCTGGACATTGTGGAGAACGAGCGTCCCTATAAGTGTGGATTCTGCAGCAAAGCCTACAAGAAGTCAAGTCACCTTAAGCAGCACATCAGGTCACACACAGGCGAGCGGCCGTATAAGTGCCTGCAGTGTAGTAAGGGATTTGCTTCGTCCGGCGTGCTGAAAGCTCATATCCGCACACACTCTGGCCTCAAGGCATTCAAGTGCCTGCTGTGTGACACCACCTTCACCACCAGTGGCAGCCTGCGACGCCACATGACCACCCACAGTGACATACGGCCCTACATGTGTCCCTACTGCCAGAAAACCTTCAAATCCTCCCCCAACTGCAGGAAGCACATGAAAACACACAGGTATGAGCTGGCTCAACAGCTGCAGCAGCAGCAGAGCTCAGATGACATGCAGCCACCCGCAGCTGTGGTGGGCACAGGGTCCCAGAGCATGCTGGAGGTGGTGGGAGACAGCCAGCAGGTGGCGTTGCCCACTGCACTTGGGGAAGATGCCCTGCAGGAATCAGAATCATATGTGAGTGCGCAGCACGCTCTACCAGAACACATGAGCCAGTTTGAGACACCAGCGCTGCCTCAACCGACCTTTGAACAGCCAGCTATGACACAAGGTAACACATCATGCACACCCATCTCAATCGAGACAAGAAATCCCAGGCGAAGGTACAAGCTGGAGGGCGAATGCCCACATCACACCCACCCACAACTAATCCGAACCGCACATTGCAGGGACTGGTATGCCACGGCCAACCAGGGTCCAGAAGCAGCGAAAAAGAGAAAAAGAGAGAGCTTTTACCAGCCAATGAAAGAGGAGTTTTCACCTGATGGAATAATCATCGTCCCCAGAGCCGAGAGGATTGTCAGAGCAAGAGGGAACACTCGAAAGGATGCCTTCAAGTGTGCTCTTGCAGTGCTGATTGCATTTGAGCCCCGGAAGGCCCTCAAGAAGCCAACAGACTGGAGAGAGACATGGCCAGAGGGTGAAGAGTGTAGAGGGAAATCGGAGGTGGGCAGCCTAGAAAAACTGACACCGCAAGATTGTCCTGAACACTTGCAATACCACATAATAGATTTTGACCTCTCCGGTTTCACTATAGCTGAGGGATTTACCCAGCCAGCACACTTCTCTACAGTACAGCAGCTTCAGGACTCAAGCACACTGGAGTCACAAGCCTTGACCACCAGCTACCACCCTCCCAACCTACTGAACGTAACACACACTGAGGTACAAACACCCTCCCAAACCACTGAACGAGTGAAGGCTTATAAATGTAATGTTTGTGACGCCTGCTTCACCACTAACGGTAGTCTGAACCGACACATGATCATCCACCTGAACACAAAGCCCTTCAAGTGCAACGTGTGTGAGGAAAGCTTCCGCACCGTCATCCTGCGCAGGAAACACATGAAGCTCCAGCATGCTGTCGGTCCCAAAGTTCTGGAAAGCGATGAGGCTGGTGAGGAGGAGGATGGGTCGGATCGCTCCGGGCTGAAGAGGAACCGCAGCGGCATCATCACGTTAACTGAAGAGCAGACGGCAGAGCTGGCCAAGAGAGACCCGGGGGATGAGGCGTCTCTGTCAGAGAAGGTTCTGGCCCAGACGGCTGCTGAACGAGATCGGATCAGTGAAGTTAAAGATAAATGTGTTGAGCTCAACATAGAGCCAAAGTTTGCAAACCGTTGCCAGTACTGCCCAAAGAGCTTCAAGAAGCCCAGCGACCTGGTGAGAACAAGGATTGCTCATTCAGTCAGCAAAGTGAAAATTCTGGACTGTTTAAGAGAAGTGGATGAGGCTATATATGAGACGGGAACAGACGTTTATGGACAGGGGCAGAAGCTGTTCAGCTGTCACATGTGCAACACGTCCTTCTCCACCAAGGGCAGTCTGAAGGTCCACATGCGCTTACACACAGGCTCCAAACCCTTCAAGTGCCCCTTCTGTGATCTCCGCTTCCGCACCTCTGGCCACCGCAAGACCCACATCCAGGGTCACATCCGGCCCTCGGACCGCAAGGCCAAGCGGAGCTCCGGCGCTGAGCCACAAAGACAGGATGTCCAAAGCGTTCCTCAGGCTCAGCATCCGTCCTCTGCCGTGGACACTCAGCCTTCTGTGGGATTATTACAGACTGCCAACACAGATCCCAACATCTACATCCCAGGAAACTCGGTGCTCACGGGCCAGTATGACCCCAGTCTGCTGCAGCAAGGGCTGGTCGGGCAAGCGATACTGCCTGCTACTGTGTCAGCGGGTGGAGATTTGACAGTCTCCTTGACGGAGGGTCTCGCCACACTTGAAGGAATCCACCTGGTGTGTCCAAATGTGCAGATCTCTGGGATTGACCCCAGCAACATCAACAACATCACTCTGCAGATCGACCCCAGTATTTTGCAGCAGACGCTGCAGCAGGGCAGTTTGCTGTCTCACTCTCTGACGACTGACTCGGGTCTGACGGCACACGCGACGGCTCACCTCATGACTGATGGAGACGCTTCAGTTCCTGCGAATGTGGTCATTCACCCTCTGACTGGCCTCTCTCTGCAGCCTCAGCCATCAGCCATCAGCAGCCTGACCAACCAGCAGGACAACGCCGGTTCTCAGGAGCTGTCACAAGTGTCCAGCGCTGGCAGCAGTGCTCCAGAAATCACACTGACCATCAACAACTCCAGTCTGACACAAGCTTTAGCACAGAGCAGTGCTGCTGCGTCCACTGCTGCCGCCAGCACATCGGAGATCACACTCACTATAGCAGGTCAGGATCTTTTACCCCATCACTGTCCATCCTCAACTCCAAACATCAACCCCGGGATCAGACTTGCTCCAGGCAGCAGCAGTTTGACGTTAAGCAGCGAGCAGCTCCTTCCTCAGAGTCCTCCTCCCTCAGCCATGACCGTCAGTGCACTGGCACCCAGCACCTCCCTGTCCCACACAGGCATGTCAGCGCAGAGCCTGGTGATGTCATCAGCGGGCATGGCCAGCGATGGCAGCGTGACTCTGACTCTGGCCGACACGCAGATCCTGGATACGGTCTCTCTCAACCTCAACACACAGATGATAGATCACCAGACAGAGGAGAAGGAAGCAGAGACGAAGCAGAAGCACCAGTGTTACTACTGCAGTCAGATGCTGCTGACGGCAAACGCTCTCAGAAGACACTGCCGACAGGAGCATGGGAAGGAGCGCTGCCACGTCTGCCGCGTCTGCAGTAAAGCCTTCAAACGAGCCACGCACCTCAAGGAGCACGAGTACGTCCATAAGAAGGGACCCAAAGTCAGCTCTCAGAAACCCAAAGTGTTCAAATGTGCCAGCTGTGACAAAGCCTTCGCCAAACCCAGTCAGTTAGAAAGACACAATCGCACACACACAGGTGAGCGGCCCTTCAAGTGTCCGCTGTGTGACAAAGCGTTCAATCAGAAGAGCGCTCTGCAGGTGCACCGAGTCAAACACACGGGCGAGAAGCCCTACAGATGTGAAGTGTGCACTATTAGCTTCACTCAAAAGAGCAACATGAAGCTGCATATGAAGAGATCTCATGGTTATCTGCCGTCCTGCAACAAACTGATGGCAAAACCACAGGAAGTAGAAGTGGTGTTGGAACACGACTCTGAGTCGGACTCCCAGCAAGCGGCGTCCCAGGAAGGCAAAGAGACTCAGTCAGGGCTGGATCTGGAGGAGGGAGTGCAGGAGTCTTCAGAAGGCTGGCAGTGCCCCATCCCAACAGTCTTCCCATGAGCACACATTCAGCTCCACTGGACTGGATATTAGCAATGCCAATTACTGCAATCTTTTTATTCTTGCCAGTGAGTGTGACTTACATTTATAGAAATCATGCATTTTTTGTGAATGTACATGATTTTGTATACTTCATGCTGCATTAGAAAACTTTCAAACTTACCGAAGTGGTTGCAAGTTAATTTTTTTTATTTTTTTATTTTTTTATTATTATTTTATGTTAGAGCCATATTTGTCTCTACTAAAGTAAAGATTGTAATTGTGTATTTGAACGCATCTAGTTTCAAGTTTTTGTTTGTATCCTCATCTGTGGTAAAACTACAGCAGTACTTTCTGCCATTGTCAGTATGTCAAAGACTGTATATATACTAGAGCTGCTTATTTGAGTCCCACAATCCCTGATATATCAGATAAATCAGTTTAATGGGAATTTTGGCAAACGTTTTTGTAATATGCAACAATATTTAAGA

Function

symbol description
znf236 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF236 (zinc finger protein 236).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00517483_00553268.mRNA True 5845 mRNA 0.52 31 517483 553738

Neighbor

gene id symbol gene type direction distance location
CI01000065_00506921_00509678 NA coding upstream 7226 506921 ~ 510257 (+)
CI01000065_00491304_00503042 NA coding upstream 14025 491148 ~ 503458 (+)
CI01000065_00466096_00487259 NA coding upstream 30205 465976 ~ 487278 (+)
CI01000065_00408239_00434714 NA coding upstream 82076 408148 ~ 435407 (+)
CI01000065_00390457_00395371 SALL3, SALL3A coding upstream 121332 390457 ~ 396151 (+)
CI01000065_00581819_00588773 NA coding downstream 27137 580875 ~ 588779 (+)
CI01000065_00605004_00618190 ARHGEF2 coding downstream 50673 604411 ~ 619124 (+)
CI01000065_00625575_00629127 EAF1 coding downstream 71837 625575 ~ 629294 (+)
CI01000065_00633526_00695106 BBS9 coding downstream 79788 633526 ~ 695106 (+)
CI01000065_00750437_00764088 BMPER coding downstream 196699 750437 ~ 764297 (+)
G267441 NA non-coding upstream 5351 511690 ~ 512132 (+)
G267438 NA non-coding upstream 9070 508182 ~ 508413 (+)
G267336 NA non-coding upstream 80883 436262 ~ 436600 (+)
G267248 NA non-coding upstream 149815 367465 ~ 367668 (+)
G267454 NA non-coding downstream 37277 591015 ~ 591219 (+)
G267455 NA non-coding downstream 37784 591522 ~ 591883 (+)
G267457 NA non-coding downstream 77498 631236 ~ 631444 (+)
G267550 NA non-coding downstream 438544 992282 ~ 992724 (+)
G267551 NA non-coding downstream 442144 995882 ~ 996173 (+)
G266932 NA other upstream 472817 43038 ~ 44666 (+)
G267432 NA other downstream 228545 782283 ~ 782879 (+)
G267577 NA other downstream 528415 1082153 ~ 1082655 (+)
G268525 NA other downstream 1685421 2239159 ~ 2239998 (+)
G268805 NA other downstream 2055169 2608907 ~ 2638205 (+)
G269181 NA other downstream 2905219 3458957 ~ 3462928 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location