CI01000065_00622545_00624625


Basic Information

Item Value
gene id CI01000065_00622545_00624625
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 622123 ~ 624657 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00622545_00624625.mRNA
ATGACTCCAGCACAGCCGAGGATTATCCTGTTATTCAGCGGGAAGCGGAAGTCGGGGAAGGATTATGTGACAGATTTACTTAAGCACAGGCTGACCGCAGAGATGTGCTGCATACTCAGACTGTCTGCGCCCCTCAAACTGCAGTATGCACAGGATCATAATCTGGACTATGAGGAGCTGTTGGGCTGCGGTCAGTATAAGGAGGAATATCGAGCCGACATGATCCGCTGGGGTGAGATGAAGAGACGGCAGGACTCGGGCTTCTTCTGCAGACTGGCCATCCAACACGCGGCGCGGCCCGTCTGGATCATCAGTGACTGCCGGAGGAGGTCGGACGTGCAGTGGTTCCGTCAGGAGTTTCCCGATCTCTGTGTGTGTGTTCGGGTGGAGGCGTCGGAGCAGACCAGATCTCAGAGGGGCTGGAGATTCACCGCAGGTGTGGACGACGCCGAGTCCGAGTGCGGATTGGACGAGGGTGTGAAGTTTGACTGGATCATCAGGAACGACGGAGACGATGATGTTCTGGAGAAACAGCTGGAGGAGCTGCTGTCACTGGTCACGTCACGACTGGACTCACACACACTCAATGACATGAAAACACAGCAATGACAACACGAGAACTCGTTTCTTTCATCTGCTCACTGGAGGACTAGACTCTTCTGCTTTATTATCTACACTTCCTGTCATCATGTGCTTCATGGTGTTCCAAACCAGCTTTAATTCTGTAGTGCTTTATACAATAGAAATTGTAGCTTCACAATAATAAACAGGAAAGTAACAGAATTAATGATGCAAACTTCATCAAATATGAGACCAGCAGCTCTACAGAAGACATTATCCACATCAGTTCAGTTCAGTTAGTAAAAAGGATTGTTTTTGAAGATTCTTCACGTGATGCTGTAAAAACAAGTAGCCTACAATATTGGCAGATCTGTTAATCGTTTTTTTTTAGAAAATTGCTGTAAACATCCTCTAGCTTGATTTTCAGCTTTCGCAAAAATTAGGAGCAATTTAGCAGAAGCAATATTAAA
>TU303828
TGTTTATGAGTGCGAAGAACACGTTACATGCAATGACTCCAGCACAGCCGAGGATTATCCTGTTATTCAGCGGGAAGCGGAAGTCGGGGAAGGATTATGTGACAGATTTACTTAAGCACAGGTGAGATGTGCAGCTCTGACAGTGTCGCGCGCAGCTGAACTGCATGAATACAGATGCTGTTGTTGTTCTGACCGCAGGCTGACCGCAGAGATGTGCTGCATACTCAGACTGTCTGCGCCCCTCAAACTGCAGTATGCACAGGATCATAATCTGGACTATGAGGAGCTGTTGGGCTGCGGTCAGTATAAGGAGGAATATCGAGCCGACATGATCCGCTGGGGTGAGATGAAGAGACGGCAGGACTCGGGCTTCTTCTGCAGACTGGCCATCCAACACGCGGCGCGGCCCGTCTGGATCATCAGTGACTGCCGGAGGAGGTCGGACGTGCAGTGGTTCCGTCAGGAGTTTCCCGATCTCTGTGTGTGTGTTCGGGTGGAGGCGTCGGAGCAGACCAGATCTCAGAGGGGCTGGAGATTCACCGCAGGTAAATGAAACGCATTATAACAGACACGAGAGGTCAGAGGATGATCTAATGCCGTGTTCTGTCCAGGTGTGGACGACGCCGAGTCCGAGTGCGGATTGGACGAGGGTGTGAAGTTTGACTGGATCATCAGGAACGACGGAGACGATGATGTTCTGGAGAAACAGCTGGAGGAGCTGCTGTCACTGGTCACGTCACGACTGGACTCACACACACTCAATGACATGAAAACACAGCAATGACAACACGAGAACTCGTTTCTTTCATCTGCTCACTGGAGGACTAGACTCTTCTGCTTTATTATCTACACTTCCTGTCATCATGTGCTTCATGGTGTTCCAAACCAGCTTTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00622545_00624625.mRNA False 1031 mRNA 0.47 5 622123 624625
TU303828 True 897 TUCP 0.52 3 622432 624657

Neighbor

gene id symbol gene type direction distance location
CI01000065_00563411_00579174 MBPB, MBP coding downstream 42040 562848 ~ 580083 (-)
CI01000065_00444905_00447425 NA coding downstream 174698 444680 ~ 447425 (-)
CI01000065_00330696_00340165 NA coding downstream 281351 330592 ~ 340772 (-)
CI01000065_00253168_00255665 NA coding downstream 366413 252691 ~ 255710 (-)
CI01000065_00120723_00133111 MBOAT1 coding downstream 489012 120406 ~ 133111 (-)
CI01000065_00768127_00769942 NA coding upstream 142947 767572 ~ 770151 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 coding upstream 158111 782697 ~ 793467 (-)
CI01000065_00843437_00865598 FOXO3, FOXO6 coding upstream 218807 843432 ~ 865598 (-)
CI01000065_00869870_00870423 MED18 coding upstream 243813 868438 ~ 870423 (-)
CI01000065_00906591_00915144 PRDM1, PRDM1A coding upstream 280767 905392 ~ 915144 (-)
G267771 NA non-coding downstream 23353 594622 ~ 598770 (-)
G267770 NA non-coding downstream 30374 591542 ~ 591749 (-)
G267739 NA non-coding downstream 72644 548000 ~ 549479 (-)
G267728 NA non-coding downstream 96539 524879 ~ 525584 (-)
G267722 NA non-coding downstream 109373 512513 ~ 512750 (-)
G267778 NA non-coding upstream 5579 630204 ~ 630439 (-)
G267781 NA non-coding upstream 8957 633582 ~ 637869 (-)
G267786 NA non-coding upstream 26924 651549 ~ 651778 (-)
G267788 NA non-coding upstream 30791 655416 ~ 655634 (-)
G267789 NA non-coding upstream 32506 657131 ~ 660848 (-)
CI01000065_00050903_00055774 NA other downstream 567736 50386 ~ 55774 (-)
G267024 NA other downstream 576036 43039 ~ 46087 (-)
G269348 NA other upstream 2683818 3304357 ~ 3312480 (-)
G269679 NA other upstream 3149255 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 3168498 3793123 ~ 3806693 (-)

Expression


Co-expression Network