CI01000065_00750437_00764088 (BMPER)


Basic Information

Item Value
gene id CI01000065_00750437_00764088
gene name BMPER
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 750437 ~ 764297 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00750437_00764088.mRNA
AATCAGAAAGTAGACTGTAAGCAGGAGAAGTGTCCGCCGCTGGCAGAGGACTGTGCGCTGGTGGTCAAACAGACAGGAGCCTGCTGTGAAAGATGCAAAGGCTGTCAGCTGAAGGGGACGTCCTACAACAGTTCCCATCACTGGATCAGCCCTGTCAAACCCTGCGTCACATACAGCTGTCAGGGAGGTCACAGCATGTGTCATAAGATGGTGTGTCCAGTCCTGTCCTGCCCGGCTCATCTTACCCACACACCGCCGGGACAGTGCTGTCCTAGATGTCGTGGTCAGAGGAAGGTGTTTGACCTGTCTCCCGGCAGCTGTCTGTTCCGCAGCGAGGTCTATGAGAACGGCTCCTCCATCAGCTATGACGCCTGCACCTCCTGCACCTGTGTGGACTCTACGGTGGCCTGCAGGAGGAGATGCTCGCCGCCCGGCAGCTGTCAGGGCAGCGGCTGCTGTGAGGAGTGCCAGTCTCACCTGAAGATGGAAGATGTGAAGTACTGCAGGGTGAAGAGCAAAATCTATAGGGACGGTGACAGATGGTCGTCTGTGAACTGCTCTCTCTGCACCTGTGTTAAGGGGAATATTGAATGTCAGCCCAAGATTTGTGTTCCTATCACCAGCTGTCCCTCGAATAAGATACTGAATCGCACTGGCTGCTGTCCTGTTTGCACTGACAAGCCAGGCGTGTGCACCGTATTCGGAGACCCTCACTATAACACTTTTGACGGCCGCACCTTTAACTTCCAGGGCACGTGTAAATATGTGCTCACTAAAGACTGCTCTCCAGCGGCCAGTTTCACAGTGCTGGTGAAGAACGACGCTCGGCGCACGCGCTCCTTCTCATGGACCAAATCCGTGGAGCTGCACACATCCGGCCTGAGCATCAGCCTCCACCAACACCTGACCGTCCGTCAGAACGGCACACGCATCGCTCTCCCCTTCCATAGCACTGGGGTCCACATCGACCTGGACGGGTACCTGCTCAAACTCACCACCATCGCAGGGCTGGAGATCTCGTGGGACGGGGACAGTCTGGTGGAGGTGGTCGCGGCGCCCCATCTGAAGGAGCGGCTCTGCGGGCTGTGCGGAAACTACAACGGTCACAGGCGAGACGACACTCTCGGAGGAGACGGCCAGTTTAAGTTTGACGTGGACGAATTTGCTGAGTCCTGGCGCGTGGAGGACAACGAGGTGTGTGAGGCTCCCAACCGCAGGCCCACATCCTTCCTCTGTCCCGGCACAGTCAAAGTAAAGCTCCGCGCGCACAGAACCTGCCAAAAGCTCAAGTCCTGGGAGTTTCAGAAGTGCCATTCTGCTGTAGACTTTACCTCCTTCTACAAGTCATGTGTAACAGACATGTGTGAGTGTCCAGTGCATAAGAACTGTTACTGCGAGTCGTTCATAGCATACAGTCGAGCGTGTGAGAGAGAGGGCATCCGTGTGCACTGGAGACCGGAGCTCGCCTGCATCAGCACACACTGCAAACATGGTGCGGTTTATGACACATGTGGACCCAGCTGCACTAAAACCTGCCATAACTGGAACGAGGTTGGACCCTGTCACAGGCCCTGTGTCGCCGGCTGCCACTGTCCCGCCAGCCTGGTCCTGTTTCAGGGCCACTGCATTAAACCTACATCCTGCCCCGGCCGATGACCCACATGACCTGTACAGGAGCAGAAGGCTGCTAGAGATCCAAACAAACAGAGGAAAAGAGAACTGGCCACGCAGGGCCTGTACAGTACTCAGATACTCACAAACTGCTCCTCTCAGCAGTCGTGTCCTCGGTGTCGGAGACTCTGGATGCCACTGCTCGCTCTGTGAGGACTTGGTTTCACCACCTAAGTGCCTTTCTGACCTCTGGA

Function

symbol description
bmper Enables extracellular matrix binding activity. Acts upstream of or within several processes, including animal organ development; regulation of BMP signaling pathway; and regulation of angiogenesis. Located in extracellular matrix and extracellular space. Is expressed in several structures, including head; hematopoietic system; mesoderm; nervous system; and pectoral fin. Orthologous to human BMPER (BMP binding endothelial regulator).

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00750437_00764088.mRNA True 1865 mRNA 0.56 10 750437 764297

Neighbor

gene id symbol gene type direction distance location
CI01000065_00633526_00695106 BBS9 coding upstream 55331 633526 ~ 695106 (+)
CI01000065_00625575_00629127 EAF1 coding upstream 121143 625575 ~ 629294 (+)
CI01000065_00605004_00618190 ARHGEF2 coding upstream 131313 604411 ~ 619124 (+)
CI01000065_00581819_00588773 NA coding upstream 161658 580875 ~ 588779 (+)
CI01000065_00517483_00553268 ZNF236 coding upstream 196699 517483 ~ 553738 (+)
CI01000065_00800809_00808759 SRI coding downstream 35579 799876 ~ 808874 (+)
CI01000065_00873636_00877487 ATG5 coding downstream 109339 873636 ~ 877487 (+)
CI01000065_01076737_01078446 NA coding downstream 312440 1076737 ~ 1079588 (+)
CI01000065_01452148_01608735 GRIK2 coding downstream 687851 1452148 ~ 1608735 (+)
CI01000065_01867964_01868983 NA coding downstream 1103491 1867788 ~ 1869813 (+)
G267457 NA non-coding upstream 118993 631236 ~ 631444 (+)
G267455 NA non-coding upstream 158554 591522 ~ 591883 (+)
G267454 NA non-coding upstream 159218 591015 ~ 591219 (+)
G267441 NA non-coding upstream 238305 511690 ~ 512132 (+)
G267438 NA non-coding upstream 242024 508182 ~ 508413 (+)
G267550 NA non-coding downstream 227985 992282 ~ 992724 (+)
G267551 NA non-coding downstream 231585 995882 ~ 996173 (+)
G267557 NA non-coding downstream 253553 1017850 ~ 1031776 (+)
G267565 NA non-coding downstream 278167 1042464 ~ 1042870 (+)
G267573 NA non-coding downstream 305534 1069831 ~ 1070218 (+)
G266932 NA other upstream 705771 43038 ~ 44666 (+)
G267432 NA other downstream 17986 782283 ~ 782879 (+)
G267577 NA other downstream 317856 1082153 ~ 1082655 (+)
G268525 NA other downstream 1474862 2239159 ~ 2239998 (+)
G268805 NA other downstream 1844610 2608907 ~ 2638205 (+)
G269181 NA other downstream 2694660 3458957 ~ 3462928 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009676 bmper coding NC_007127.7 CM002900.2 7154266 ~ 7195000 (+)