CI01000065_00782736_00793467 (NT5C3A, NT5C3)


Basic Information

Item Value
gene id CI01000065_00782736_00793467
gene name NT5C3A, NT5C3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 782697 ~ 793467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_00782736_00793467.mRNA
ATGGACAGAAACGCTGTGGTGAAAGTGGGCGCGATGGCGAGCGCCACTGTGTGCGCGCTGTTCGGCGGAGTCGTGTTCGCGCAGTACATGCTCACTAAAAAACAGAGAGCAGGGAAGAAAACCAAGATAATCGAAATGATGCCAGAGTTTGAGAAGAGCACGGTTCACATCAGAGACCCTGAGCGGGTGGAGCAGATCATCTGCAGTCTCATTAAAGGTGGAGCGTCCAAACTGCAGATCATCACAGATTTTGATATGACGTTAAGCAGGTTTGCTGTCAATGGAAAACGTTGCCCAACGTGTCATAATATCATTGATAACTGTAAGTTGGTGACAGAAGACTGTAGGAAAAAGCTGCTCCAGCTAAAGGAGACGTATTATCCTATAGAGATAGACCCTCATCTGACCATGGAGGAGAAATACCCATTTATGGTGGAGTGGTATTTTAAGTCTCACACGTTATTGGTAGAACAGAGATTGGAGAAGGACAAACTCCCAGAGGTGGTGAGGGAGTCGGACGTCTGTCTAAGGGAAGGGTACGAGCAGTTCTTTGACCGGCTGCACCAGCACAGCGTTCCTGTCTTCATCTTTTCAGCGGGTCTGGGAGACGTGCTGGAGGAAATCATCAGACAGGCGGGCGTCTACCACACCAACATCAAAGTCGTGTCCAACTTCATGGACTTCGATGATAACGGGGTTCTGAAGGGCTTTAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGAGCCCTGAGGAACACTGAGTATTTCAAACAACTGAAGGACAATGGGAACATCATTCTGCTAGGAGACTCGCTTGGCGATCTCAACATGGCGGACGGCGTTCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAATGACAAGGTAGAGGAACTGTTGGAAAAGTACATGGACTCTTACGATATTGTCCTGCACATCACAATTAAGCTGAGAGGACAAGAGCCTCGGCCTCATCGCTGCCATGCAGATGCTGCTTTATTCACTTGCCCCTTCTGCTCAACTGACGTCTGTAAGCCAAGACAGTACCATCAAATAATGGCCCATATAGCTGGACATAAACTGAGGGCGGTTGAATATGGAGATCAGGTTATATACAGCTGTAACATTGGCTGTGGCAAAACGGCCAGACATTTTCACTGCTGCCAGTGTCCCAAGACTTACATTAATAAAGGTTCCCTAAAAAAGCATCTTTCCAACAGTCATCCCATAGCTACTTGCACTTTAAAACCACAGTCA

Function

symbol description
nt5c3a Predicted to enable 5'-nucleotidase activity. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in brain; myotome; and yolk syncytial layer. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).
nt5c3 Enables 5'-nucleotidase activity. Involved in CMP catabolic process. Located in mitochondrion. Is expressed in several structures, including alimentary system; hemolymphoid system; liver; nervous system; and respiratory system. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_00782736_00793467.mRNA False 1266 mRNA 0.48 11 782736 793467

Neighbor

gene id symbol gene type direction distance location
CI01000065_00768127_00769942 NA coding downstream 12585 767572 ~ 770151 (-)
CI01000065_00622545_00624625 NA coding downstream 158111 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP coding downstream 202653 562848 ~ 580083 (-)
CI01000065_00444905_00447425 NA coding downstream 335311 444680 ~ 447425 (-)
CI01000065_00330696_00340165 NA coding downstream 441964 330592 ~ 340772 (-)
CI01000065_00843437_00865598 FOXO3, FOXO6 coding upstream 49965 843432 ~ 865598 (-)
CI01000065_00869870_00870423 MED18 coding upstream 74971 868438 ~ 870423 (-)
CI01000065_00906591_00915144 PRDM1, PRDM1A coding upstream 111925 905392 ~ 915144 (-)
CI01000065_01017206_01031155 NA coding upstream 223229 1016696 ~ 1031678 (-)
CI01000065_01037474_01041412 NA coding upstream 243697 1037164 ~ 1041412 (-)
G267791 NA non-coding downstream 115833 666609 ~ 666903 (-)
G267790 NA non-coding downstream 121053 661271 ~ 661683 (-)
G267789 NA non-coding downstream 121888 657131 ~ 660848 (-)
G267788 NA non-coding downstream 127102 655416 ~ 655634 (-)
G267786 NA non-coding downstream 130958 651549 ~ 651778 (-)
G267850 NA non-coding upstream 2789 796256 ~ 796967 (-)
G267852 NA non-coding upstream 4559 798026 ~ 798242 (-)
G267853 NA non-coding upstream 5388 798855 ~ 799073 (-)
G267752 NA non-coding upstream 17295 810762 ~ 811315 (-)
G267856 NA non-coding upstream 31916 825383 ~ 986069 (-)
CI01000065_00050903_00055774 NA other downstream 728349 50386 ~ 55774 (-)
G267024 NA other downstream 736649 43039 ~ 46087 (-)
G269348 NA other upstream 2514976 3304357 ~ 3312480 (-)
G269679 NA other upstream 2980413 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 2999656 3793123 ~ 3806693 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding CM030136.1 CM030136.1 15626198 ~ 15630089 (-)