CI01000065_01103779_01119916 (SIM1, SIM1A)


Basic Information

Item Value
gene id CI01000065_01103779_01119916
gene name SIM1, SIM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1103544 ~ 1120757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_01103779_01119916.mRNA
AGAGGTCAGCGTTTCTAACAAATCGTGATTTCTCATGGAGCGGCCGCCAGTGAATGGGATCCAATTGGAAAATCCTGTCTGGTCCTTCAGTATCCAATGAGCTGAGATCAGGGGGAGGGTCCGCGCGCTGCCCAGACAGACAGAAAGAGACTTCAACAAACTCTCCTCCAAACACGATCCTTCTGGATACAAAGATGCCATGTTTCCCGTGTTTGCTGTGGAATTCCGCGTGAATTAGTCTGGATATGTGTCTTTGTGGAGTTATGGACTTATGAAGACGACTCGAGTGTGCAGTGGGATCTGACATGAGGTAAGAAGACCTGCAAGTTTGAGCCTATTGAGACGTAAAAGTTTTACTTCAGCAAAATATGATGTTAGAAAGGCAGAATGACATCCCGCGTGCATGAAAATAGAGGAGAAATCAAGAAAATGCGCAGATTAAATGATCATAAACGTCAATTTAATTCTCATAAATAAAGGTTTTGATGTGGTCATTCGTTTTCCACAAAAGTGCATTTCAAAGTGGGAAGAAGTGAACGTGCGGTCTGCTGTTTTCCAGGAATATCACGCGCATCTGATGGAAGGAAGGAAGTTCTTAATGAAGAGATTCTGGGCCCGAGTGGATTTCATGTGTGTGTAAATGAAGACTCGCTGCGGATGAGACAAACTCATGATCATGAAGGTCTGCGTGTAGGACATCTCAGGAACATCAGTGAAGTGTTGGGAACTGGCCATGGCAGGAACACTTTCGGGACGGTAGAAGTGTATGCGGCTGAGTTTGTGTGTGAGAGAGTGAAGTGACCAGCAGAAGGGTGTGAGACAGCTGTCCGTGACCGGGAGCATGAAGGAGAAGTCGAAGAACGCGGCGCGGACGCGTCGGGAGAAGGAGAACAGCGAGTTTTATGAGCTGGCCAAACTGCTGCCTCTGCCCTCGGCCATCACCTCACAGCTGGACAAAGCCTCCATCATCAGACTGACCACCAGCTACCTGAAGATGAGGATAGTCTTCCCTGAAGGTCTCGGAGAATCTTGGGGCCACGTGAGTCGCGCGAGCTCTCTGGACAACGTGGGCCGAGAGTTAGGATCACATCTGCTTCAGACTTTGGACGGCTTTATTTTTGTGGTGGCTCCTGATGGAAAAATCATGTACATTTCAGAAACAGCATCAGTGCATTTAGGGTTATCACAGGTAGAGCTGACGGGGAACAGCATTTATGAGTACATCCACCCCGCTGACCACGACGAGATGACCGCAGTGCTGACCGCTCACCAGCCGTATCACTCACACTTCGTCCACGAATATGAAATGGAACGATCGTTCTTTTTGAGAATGAAGTGTGTCCTCGCTAAGAGAAACGCAGGCTTGACGTGTGGAGGATACAAGGTGATTCACTGCAGCGGCTATCTGAAGATCCGTCAGTACAGCCTGGACATGTCTCCGTTCGACGGCTGCTATCAGAACGTGGGTCTGGTGGCCGTCGGTCACTCTCTGCCCCCCAGCGCCGTCACCGAGATCAAGCTCCACAGCAACATGTTCATGTTCAGAGCCAGCCTGGACATGAAGCTCATCTTCCTGGACTCCAGGGTTGCGGAGCTCACTGGCTACGAGCCGCAAGACTTAATAGAGAAGACACTTTATCATCACGTCCACAGCTGTGACACTTTCCATCTCCGCTGCGCGCACCACTTGTGTGAGTTAGTACTGGTAAAAGGACAGGTCACCACAAAATACTACCGATTCCTGGCTAAGCAGGGCGGATGGGTGTGGGTCCAGAGTTACGCTACCATCGTACACAACAGCAGATCGTCCAGACCTCACTGCATCGTCAGCGTCAACTACGTCCTCACCCAGTCTTTAGTGAGAAAAGGGAACGAGGTGGATATGTCTAGCGTCTTATCGTGGTGTTATCAGAGTCCACTCACACGGGCTGTGAGGGACACGGAGTACAAAGGACTACAGTTGTCTTTAGACCAGGTGACGTCCACCAAACCCTCGTTCACCTACAGCAGCCCCTCCAACCCTATCAGCGAGAACAGAAGAGTCGGCAAAAGCAGGGTCTCCCGTACCAAGACCAAAACGAGACTCTCTCCCTATTCACAGTATCCGGGTTTCCCCACGGATCGCTCGGAGTCGGATCAGGATAGCCCCTGGGGTGGGAGCCCCCTCACTGACTCTGCGTCTCCTCAGCTTCTGGAGCAGTGTGAAGGCGTAGACTCCTCATGCGTGTACCGACAGTTCTCAGAACCGCGGCCGCTGTGCTACGGCCTCCCGCTGACAGACGACCACCACACCTCCAGCGACCTCTACGGCCACACTCACTCCGAGTCCTGCGAGAGAGGACGCTGTAAGGCTGGCCGATACTTCCTAGGCACCCCTCAGCCCGGACGAGAGGCGTGGTGGGGTGCGGCCCGTTCTGTCCTCCCGTTACCCAAGTCCTCGTCCGAGAACGGAGACAGTTTTGAAGCTGTGATGCCTCACATTGCCTCTATCCATAGCCTGCAAGTGAGGGGTCACTGGGACGAGGACAGCGTGGTCAGCTCACCTGACGGCGGCTCAGCGAGCGATTCAGGCGACCGATACCGCGCGAGTCCTCAAGAGCCCAGCAAGATTGAGACATTGATTCGAGCCACGCAGCAGATGATCAAAGAGGAGGAAAGTCGTCTGCAGCTGCGAAAGGCTCCTACAGAAATACCTTTGGAGTCTACAAACGGTCTGGCCAAGAGCCACGGGCCTTCGTTTCACAGTACCGACTTCCCCCAGTCAGCGTTGCAGGGTGTGGTGTGTCGGGGGCCGGCTCAGGTGATAAGCCCCGCCCCTAGCCCTGTTCCTCTGTCCCGTCTCAGCAGCCCCATCCCAGACAGACTGGGTAAAAGTAAAGACTTCCTGCAGAATGAGCTCTCCTCCTCCCAGCAGCAGCCGCTGCCCCTGACGGGCACATGTGCTGTCTCTCCGACGCCCGCACTGTACCCCTCACACCCCCGCCAGTACCTGGAAAAACACACGGCCTACTCGCTCACCAGCTACGCACTAGAACATCTGTACGAGGCGGACAGCTTTCGAGGATACTCCCTGGGTTGCTCAGGTTCCTCCCATTACGACATGGCCACTCATCTACGCATGCAGGCTGAACAAGCGCCGGGCCATAAAGGCACCTCCGTCATCATCACCAACGGCAGCTGATGCTTATCCAATCACGTGCCGCCACTCAGCGCTTCACCCTCTCACACACGCTAGCCTTCAATTTCTTTCTCTCTCTTTTTTTTTTTTTTGGTAACACTTTATTTTACAGTGTCCTTTTTACACGTTACATGTAGTTGCTATAGTAATAACTATAAATTATGCATAATTACATGCAGTTACTTTGGAAATGTAATAGGTTACAGATTACAAGTTACCATATTTAAAATGTAATAAA

Function

symbol description
sim1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development and proximal tubule development. Predicted to be located in nucleus. Is expressed in several structures, including basal plate midbrain region; central nervous system; corpuscles of Stannius; intermediate mesoderm; and pronephros. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SIM1 (SIM bHLH transcription factor 1).
sim1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and ureteric bud development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in obesity.

GO:

id name namespace
GO:0021536 diencephalon development biological_process

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_01103779_01119916.mRNA True 3416 mRNA 0.52 12 1103544 1120757

Neighbor

gene id symbol gene type direction distance location
CI01000065_01037474_01041412 NA coding downstream 62132 1037164 ~ 1041412 (-)
CI01000065_01017206_01031155 NA coding downstream 71866 1016696 ~ 1031678 (-)
CI01000065_00906591_00915144 PRDM1, PRDM1A coding downstream 188400 905392 ~ 915144 (-)
CI01000065_00869870_00870423 MED18 coding downstream 233121 868438 ~ 870423 (-)
CI01000065_00843437_00865598 FOXO3, FOXO6 coding downstream 237946 843432 ~ 865598 (-)
CI01000065_01148241_01167007 ASCC3 coding upstream 27117 1147874 ~ 1167007 (-)
CI01000065_01173590_01277821 ASCC3 coding upstream 52758 1173515 ~ 1277821 (-)
CI01000065_01297837_01321136 NA coding upstream 177042 1297799 ~ 1321136 (-)
CI01000065_01373412_01382125 NA coding upstream 252517 1373274 ~ 1382947 (-)
CI01000065_01911879_01931555 HACE1, HACE1.L coding upstream 790755 1911512 ~ 1931555 (-)
G267946 NA non-coding downstream 20183 1082998 ~ 1083361 (-)
G267944 NA non-coding downstream 24185 1079082 ~ 1079359 (-)
G267926 NA non-coding downstream 67192 1036089 ~ 1036352 (-)
G267856 NA non-coding downstream 117475 825383 ~ 986069 (-)
G267863 NA non-coding downstream 223538 877790 ~ 880006 (-)
G267997 NA non-coding upstream 210313 1331070 ~ 1331343 (-)
G268087 NA non-coding upstream 245219 1365976 ~ 1366304 (-)
G268095 NA non-coding upstream 331324 1452081 ~ 1463686 (-)
G268151 NA non-coding upstream 482705 1603462 ~ 1681220 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 319883 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 478887 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 523517 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 1049157 50386 ~ 55774 (-)
G267024 NA other downstream 1057457 43039 ~ 46087 (-)
G269348 NA other upstream 2187686 3304357 ~ 3312480 (-)
G269679 NA other upstream 2653123 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 2672366 3793123 ~ 3806693 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010370 sim1a coding NC_007127.7 CM002900.2 1465624 ~ 1503023 (-)