CI01000065_01173590_01277821 (ASCC3)


Basic Information

Item Value
gene id CI01000065_01173590_01277821
gene name ASCC3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1173515 ~ 1277821 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_01173590_01277821.mRNA
ATGACCTCTGCATTCGTCGGAGGAGCCAAGATGCTGCTGCCTGAGGGGATCAGAAGAGAGAATAATAAGATGTATGAGGAGGTTCAGATCCCCCCCAACGAGCCCATGCCCATTGGGTTTGAGGAGAAACCCGTGTACATCTCGGAGTTGGACGAGAGAAGGAAACGTGGTCAAGTGAATGCTGGCTCCCCACTGATAATGGTTTCGCTCGCCGGCAGTGCGAAGAAACGCTGCGAAACCGCCGAACTGAAAGTGTTAAGGGTGCTCTGGGCACAGACTGCGAGCATCTTGAGCACTAGTTCGTGTAGGAGTAGAGCGAATCGCTGTCCTGGAAACCATGCCATTGCCACAATTGGCCAGTTGGTGTTCAAGGGCATGAAAAGGTTAAACAGAATCCAGTCTATAGTGTTCGAGACAGCTTACAACACCAATGAAAACCTGCTCATCTGCGCACCCACCGGTGCTGGCAAAACCAACATCGCCATGCTCACCGTCCTCCACGAGATCCGTCAGCACCTGCAGCCTGGGGGAGTCATCCGCAAGGACCAGTTTAAGATTGTATACGTAGCTCCTATGAAGGCCCTGGCTGCTGAGATGACTAATTACTTCAGTAAGCGATTGGAGCCTCTGGGCATCGTTGTCAAGGAGCTGACGGGAGACATGCAGCTGACCAAAGGAGAAATCCTCCGCACTCAGGTAACAAATACAAACGGATACACCTTTGGCTATAATAATATTGGACATTGTCTGGTGGCAGCTAGACTTTGTTCGCTTCACTGGACTTGTACTTGGCTAATCCCAACCCCGACTCATCAGTGGCTTCATCTGTTGTCTGATGCTTTGGGGATGGTCATACATCATGATGCCATGAAACTCGATTTCCTGATAAAAGGCTGGTGTAAAGATGTTGAGGGTGGTGTAATGTTGGTGTTAAAGATCTCAAGTGGTAGCAGAAAGGTGTGGTTAGCTGGGAGAATATCAAGTATCTTGCCTATTTTTGCAGCATTGGAGATGTCTCTGAGGTGTCTGGTAGACGCTGAGGCAGGAAAAACAAGTGGTCATTACCGGCAGACCTCACAGTTTGGCTCGTGGAGCTCAGAGGCACGGCGTCATTGCGCACGCCTGCTTTTTGGCTATGCACACTGTGTTTTAACCATTATTTTAGTTAATTGCACAAAATGGCATGGGAAACACACGGTGATGTTGGTGACGACTCCAGAGAAGTGGGATGTGGTGACCAGGAAGAGTGTGGGGGACGTGGCTCTGTCTCAGATCGTCCGACTGCTCATCCTGGATGAAGTTCATCTTCTTCATGAGGACAGAGGGCCCGTGCTGGAGAGCCTGGTGGCCCGGACGCTGCGTCAGGTGGAGTCAACCCAGAGTATGATTCGCATACTTGGTCTCTCTGCAACGCTGCCAAATTACTTGGATGTGGCGTCTTTCCTGCATGTGAACCCTTTCATTGGATTGTTCTACTTTGACAGTCGTTTCCGTCCTGTTCCACTTGGCCAGAGCTTTGTTGGCATCAAGACTACAAATAAGGTTCAGCAGCTGCATGACATGGAGGAGGTTTGTTATGAGAAAGTCCTGGAGCAGATCAGAGCGGGGTTTTTTAATTATGATATCAGGACAGTTCAGGACATCACCCTTGACACGTTTGAGGATCATTATCAAATTAAATTTAAGTGTTCGATCAGCTCATTAAATCTGTTTTCTGAAGAGTCTTTCCACATCCTTACAGCCCCAATAACCACATTTTCTGTCCTCTCTCTCTCGCTCTCTCTGTGCTCTGAAGAAGAGCAGATTGCGGTACTGACCGTGGCAAATACAGCCCAAAACAAACAGAACAACAGCGCATCAACACAGAGCCATTCGAATAACAATATTTGTAAGAGTAGAATAGTCTTTTCAAAGATTGCCAAAGAGATTCAGGTGTTTCTTATTAGATATCCTCATCCTCAAGCGGTGATGGTGTTTGTACATGCCCGCAACTCTACCGTTCGCACCGCCATGAGTCTGATCGAGATGGCCAAGAACCGGGGAGAGCTGTCTTTTTTCCAGGTCACCCAGGGTCCAGACTACGGCCAGTGTGAGAAACAGGACAAAGAAATTCAGAGCGGGCTCTCTTCAGCCGGCCAAAGCGGTGTTATTTATGAGCAGTTATTCACCGGCTCTGCAGGAGAGAAAAGCATTGCTCATAGAGACTTTTTACCGATCCTGAGCGTCATTCGGGAAGCAGAGGTCATTGTGTTTGTGATGGCCACAGGCTGCTCGCTCAGATCTCGTCACGTCTCAGTATCTATATCACCCAGAGGCGTCAGGGAGAAAGCGAACAGCTTTAAGGTTAAACTTCATCCAGCTCGTGTATCTTCAAACCTTTGGCAATATGATTGTTTTACTGTGCAGCGCTCCAGAAACAAGCAGATGAGGGAGATGTTTCCTGACGGCTTCGGGATCCATCACGCCGGAATGTTACGGCAGGACCGCACGCTGATGGAGAACATGTTTTCCAGAGGATACTTGAAGGTTCTGGTGTGCACCGCCACGCTGGCCTGGGGTGTTAACCTGCCCGCTCACGCCGTCATCATCAAGGGCACTAATATCTACGATGCCAAGCGTGGTTCACTGGTGGATCTGGGCATCCTGGACGTGATGCAGATCTTCGGACGGGCCGGACGGCCACAGTTTGACAAGTACGGTGAGGGAACCATCATCACAACCCATGAAAAGCTGAGCCATTACCTGACGCTGCTGACTCAGCAGAACCCCATCGAGAGCCAGTTCCTGCAGAGCCTCGCCGACAACCTCAACGCTGAGATCGCTCTAGGGACGGTCACTAATGTTGATGAAGCTGTCCGGTGGATGAGTTACACGTACCTGTACGTGCGAATGAGAGCCAATCCACTCGTTTACGGCATCAACCACAAGGCCTATCAGATGGACCCGCAGCTGGAGCTCTACAGGAAGGAGTTAGTCGTGGAGTCCGGCAGGAAGCTGGATAAGGCGCGGATGATCCGTTTTGACGAGAGGACTGGTTATTTTGCATCCACAGACCTTGGCAGGACAGCCAGTCACTTCTACATAAAGTACAACACCATTGAGACTTTCAATGAGCTTTTCAACTCGCAGAAGACCGAAGCAGATATTCTGAGCATTGTTTCAAAAGCTGAAGAATTCGAGCAGATCAAGGTTCGGGACGAGGAGCTGGAGGAACTGGAGAAGATGTTGTGTGATTTCTGCGAGCTGCCGGCGGCCGGAGGAGTGGAGAACGGCTACGGCAAGATAAACATCCTCCTCCAGACGTACATCGGCCGCGGGGAGGTGGACAGCTTCTCCCTCATATCTGACCTGTCTTACGTCGCGCAGGTGAGACACAAACACAGAGAGAGAACAATGTAGTTTGTCTTCATTTTATGCTTCTTAAAAATGGCTTACACGTTGACAAATCAGTCGAATAGAAACAGAGCCATTAAA
>TU304063
CACACTCTTGCATGCATTTCATTGGGTATTTCTCTTGTTTACCTTTTTATTTATTGTGATTACTGATTTTTCAAGATGATTCATTTCCAGCTGCTGGTGAGTATAGAAAATAGGTTATACGTTTAGAGAAACTAAAACACAGCTGCTTTACATTCTGAGTTAGAGGTGAACAAACCATATATTTGTAAAATCCAGACCTGTGTTCTCTTCAGGCGTCAGGGAGAAAGCGAACAGCTTTCGTGTATCTTCAAACCTTTGGCAATATGATTGTTTTACTGTAA

Function

symbol description
ascc3 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in DNA dealkylation involved in DNA repair; DNA duplex unwinding; and cell population proliferation. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human ASCC3 (activating signal cointegrator 1 complex subunit 3).

GO:

id name namespace
GO:0006307 DNA dealkylation involved in DNA repair biological_process

KEGG:

id description
K18663 ASCC3; activating signal cointegrator complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_01173590_01277821.mRNA False 3474 mRNA 0.50 24 1173515 1277821
TU304063 True 281 lncRNA 0.36 2 1185073 1185374

Neighbor

gene id symbol gene type direction distance location
CI01000065_01148241_01167007 ASCC3 coding downstream 6508 1147874 ~ 1167007 (-)
CI01000065_01103779_01119916 SIM1, SIM1A coding downstream 52758 1103544 ~ 1120757 (-)
CI01000065_01037474_01041412 NA coding downstream 132103 1037164 ~ 1041412 (-)
CI01000065_01017206_01031155 NA coding downstream 141837 1016696 ~ 1031678 (-)
CI01000065_00906591_00915144 PRDM1, PRDM1A coding downstream 258371 905392 ~ 915144 (-)
CI01000065_01297837_01321136 NA coding upstream 19978 1297799 ~ 1321136 (-)
CI01000065_01373412_01382125 NA coding upstream 95453 1373274 ~ 1382947 (-)
CI01000065_01911879_01931555 HACE1, HACE1.L coding upstream 633691 1911512 ~ 1931555 (-)
CI01000065_01955024_01969974 NA coding upstream 674957 1952778 ~ 1970223 (-)
CI01000065_01982908_01987337 NA coding upstream 704582 1982403 ~ 1987488 (-)
G267946 NA non-coding downstream 90154 1082998 ~ 1083361 (-)
G267944 NA non-coding downstream 94156 1079082 ~ 1079359 (-)
G267926 NA non-coding downstream 137163 1036089 ~ 1036352 (-)
G267856 NA non-coding downstream 187446 825383 ~ 986069 (-)
G267997 NA non-coding upstream 53249 1331070 ~ 1331343 (-)
G268087 NA non-coding upstream 88155 1365976 ~ 1366304 (-)
G268095 NA non-coding upstream 174260 1452081 ~ 1463686 (-)
G268151 NA non-coding upstream 325641 1603462 ~ 1681220 (-)
G268237 NA non-coding upstream 479793 1757614 ~ 1757990 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 389854 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 548858 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 593488 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 1119128 50386 ~ 55774 (-)
G267024 NA other downstream 1127428 43039 ~ 46087 (-)
G269348 NA other upstream 2030622 3304357 ~ 3312480 (-)
G269679 NA other upstream 2496059 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 2515302 3793123 ~ 3806693 (-)
G267863 NA non-coding downstream 305067 877790 ~ 880006 (-)

Expression


Co-expression Network