CI01000065_01452148_01608735 (GRIK2)


Basic Information

Item Value
gene id CI01000065_01452148_01608735
gene name GRIK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1452148 ~ 1608735 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_01452148_01608735.mRNA
GGGATATTTGAATCCATTGAAAGTGGCCCATCAGGTGCTGAAGAACTTGCCTTTAAGTTTGCTTTAAATACAATCAACAGGAACAGAACTTTACTGCCAAACACCACACTTACATACGACATCCAAAGGATAAACATCCACGACAGCTTTGAGGCCTCCAGAAAAGCTTGTGACCAGCTCTCTCTGGGTGTGGCGGCCATCTTTGGCCCATCCCACAGTTCTTCGGCCAACGCGGTGCAGTCCATCTGTAACGCTCTCGGGGTGCCTCATATCCAGACCAAGTGGAAGCACCAAGTGTCAGACAACCGTGACTCCTTCTACGTCAGCCTTTACCCAGACTTCTCCTCCCTCAGCAGAGCCATTTTAGACTTGGTTCACTTCTTCAAGTGGAAAACGGTCACTGTGGTTTACGATGACAGCACAGGTCTGATTCGATTACAGGAGCTCATCAAGGCTCCATCTCGTTACAACATCCGATTAAAAATCCGGCAGCTACCAGCAGAAACAAAAGATGCCAAGCCCCTTCTTAAAGAAATGAAACGAGGAAAAGAGTTTCATGTGATCTTTGACTGTGGTCATGAGATGGCAGCTGGCATCCTTAAACAGGTGAGTCCTTTCATTATCTCATTCCACACTAAGGATTACAAAGATGCATTTGGAATATTTGATCTCTTCGCATTGGATGTGGAACCCTATCGCTACAGCGGGGTCAACATGACAGGATTCCGTATCCTAAACACAGAGAACAGCCAGGTGTCGTCCATCATTGAAAAGTGGTCCATGGAGCGTCTACAGGCACCGCCTAAACCAGACTCTGGCCTACTGGATGGTTTCATGACAACAGATGCTGCCCTGATGTATGACGCAGTACATGTGGTGGCTGTGGCCGTCCAACAGTCTCCTCAAATCACCGTCAGCTCACTCCAGTGTAACCGCCACAAGCCCTGGCGCTTCGGCAACCGCTTCATGACGCTCATCAAAGAGGCCCACTGGGATGGCTTGACCGGACGGATAAATTTCAACAGGACCAACGGCCTGAGGACAGATTTCGATCTGGATGTGATCAGCCTGAAGGAAGAGGGGCTAGAGAAGATTGGGACATGGGATCCTGCAAGTGGTTTGAACATGACAGAGAATCAGAAGGGAAAGGCAGCCAATGTGACTGACTCTCTCTCCAACAGATCGCTGGTGGTGTCCACTATACTGGAAGAGCCTTACGTGATGTTCAAGAAGTCAGATAAACCGTTGTACGGTAACGATCGTTTCGAGGGCTTCTGCATCGACCTGCTGCGAGAGCTGGCTGCCATCCTGGGCTTCACCTATGAATTGCGACTGGTGGAGGATGGCAAATACGGAGCGCAGGAAGAGAGCACGGGCCAGTGGAATGGCATGGTCCGAGAACTGATGGACCATAAAGCTGATCTTGCAGTGGCGCCCCTGGCCATCACGTACGTGCGGGAGAAGGTCATCGACTTTTCCAAACCCTTCCTGACGCTGGGGATAAGTATACTGTACCGCAAGCCCAACGGCACCAACCCAGGGGTGTTCTCCTTTCTCAACCCCCTGTCCCCCGACATCTGGATGTATATTCTGCTCGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGCCCCTACGAATGGTATAACCCCCACCCATGCAACCCCGACTCGGACGTGGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGATCTGAGCTCATGCCCAAAGCCCTTTCCACCAGGATAGTAGGAGGAATCTGGTGGTTTTTTACCCTAATCATCATCTCCTCCTATACGGCCAACCTAGCCGCCTTCCTCACCGTGGAGAGAATGGAATCTCCAATTGACTCGGCTGATGACCTGGCCAAGCAGACCAAGATTGAGTATGGAGTGGTGGAGGATGGTGCTACAATGACCTTCTTTAAGAAAACAAAGATCTCCACGTATGATAAGATGTGGGAGTTCATGAGCAGTCGAAGACATTCGGTCATGGTGAAGAGCATCGAGGAGGGAATTGAACGCGTTCTCACCTCAGATTATGCCTTCCTCATGGAGTCCACCACTATCGAATTCGTCACCCAGCGCAACTGCAACCTCACACAGATCGGAGGCCTCATAGACTCCAAGGCCTACGGGGTTGGCACCCCAATGGGGTCCCCGTACCGAGATAAGATCACCATCGCAATCCTGCAGCTACAGGAAGAAGGGAAGCTGCACATGATGAAGGAGAAATGGTGGCGAGGAAACGGCTGTCCCGAGGAGGAGAACAAAGAGGCCAGTGCGCTGGGCGTCCAGAACATCGGTGGCATTTTCATAGTGTTGGCTGCGGGACTCGTCCTCTCTGTATTTGTGGCAGTTGGGGAGTTTCTCTATAAGTCCAAACAAAACGCACAGCTGGAAAAGAGATCCTTCTGCAGTGCCATGGTGGATGAGCTACGGGTTTCCCTCAAGTGCCAGCGACGGCTCAAACACAAGCCGCAGCCACCCGTCATGGTCAAAACGGATGAAGTCATCAACATGCACACCTTCAATGACCGAAGACTGCCGGGCAAAGAGACCATGGCT

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process

KEGG:

id description
K05202 GRIK2; glutamate receptor, ionotropic kainate 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_01452148_01608735.mRNA True 2613 mRNA 0.51 14 1452148 1608735

Neighbor

gene id symbol gene type direction distance location
CI01000065_01076737_01078446 NA coding upstream 372560 1076737 ~ 1079588 (+)
CI01000065_00873636_00877487 ATG5 coding upstream 574661 873636 ~ 877487 (+)
CI01000065_00800809_00808759 SRI coding upstream 643274 799876 ~ 808874 (+)
CI01000065_00750437_00764088 BMPER coding upstream 687851 750437 ~ 764297 (+)
CI01000065_00633526_00695106 BBS9 coding upstream 757042 633526 ~ 695106 (+)
CI01000065_01867964_01868983 NA coding downstream 259053 1867788 ~ 1869813 (+)
CI01000065_01938179_01949512 NA coding downstream 329350 1938085 ~ 1950751 (+)
CI01000065_02222213_02282352 NA coding downstream 613294 2222029 ~ 2282432 (+)
CI01000065_02442834_02444552 NA coding downstream 832924 2441659 ~ 2445951 (+)
CI01000065_02562189_02562709 NA coding downstream 953454 2562189 ~ 2562738 (+)
G268022 NA non-coding upstream 28613 1372600 ~ 1423535 (+)
G268021 NA non-coding upstream 36011 1367229 ~ 1416137 (+)
G268016 NA non-coding upstream 39907 1404794 ~ 1412241 (+)
G268017 NA non-coding upstream 51391 1375350 ~ 1400757 (+)
G267561 NA non-coding upstream 327823 1123303 ~ 1124325 (+)
G268083 NA non-coding downstream 89984 1698719 ~ 1699953 (+)
G268222 NA non-coding downstream 167491 1776226 ~ 1779285 (+)
G268256 NA non-coding downstream 222694 1831429 ~ 1831634 (+)
G268274 NA non-coding downstream 347630 1956365 ~ 1960880 (+)
G268270 NA non-coding downstream 363629 1972364 ~ 1974589 (+)
G267577 NA other upstream 369493 1082153 ~ 1082655 (+)
G267432 NA other upstream 669269 782283 ~ 782879 (+)
G266932 NA other upstream 1407482 43038 ~ 44666 (+)
G268525 NA other downstream 630424 2239159 ~ 2239998 (+)
G268805 NA other downstream 1000172 2608907 ~ 2638205 (+)
G269181 NA other downstream 1850222 3458957 ~ 3462928 (+)
G269225 NA other downstream 1944069 3552804 ~ 3553214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009613 NA non-coding NC_007127.7 CM002900.2 1776515 ~ 2105556 (+)
bowfin (Amia calva) AMCG00003972 grik2,LOC107667969 coding CM030121.1 CM030121.1 27430090 ~ 27449894 (+)