CI01000065_01982908_01987337


Basic Information

Item Value
gene id CI01000065_01982908_01987337
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1982403 ~ 1987488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_01982908_01987337.mRNA
ACAGAGGGTGCAACAGCTAGAGGGAAAGAACAGAGGGTCCAGAGCTACACATCCAAACGTGAGGCTGAATTGTTTGAACTTGTCAAACAGTTGAAAGAGGAGATAACAGAAATCAAAAACAGCATCCGTGAATCACAACCACCCTTCCGTCATGGGCGACCACCTTCCAAGAAAACACTTTTCAAAAGGCTGTAGGGCACCACAGCATACAGTGAATGTGGATCAAGTGATGGCAGTGGATCCAACTGCACTTCACACCCAGAGTCAGAGACAATGTGGCTTGGGTGGTAACACCAGCGAGCTGCTCTGTAACAACGTAAGTCATCTTGCACAGCAAGAAAATGTACAGCAGCACTCTGCAAGTGCAGACAGGCTGGAGGGGTCCATCTATGCAGCCCACCTTTCTCCTCAACTGCTGAACCTGATAGGAAAGAAATGTACTGTCAATTGCTACCTGGATGGTGTCCCAACACAAGTATTATGGGATACGGACTCACAGGTCTGCCTGATCAATGAAAAGTGGCGCAAAGAACATCTATCTCACACAAAAGTAAGAGACACAGAGGAGATACTAGGACCAGGTACATTGACTGGAAAGGCTGTAAATCAGACAGACATCCCTTTCAGCGGATGGATTGAAGTAAAGTTCCAGCTTGAGCCTTCTGCCGTATCCAGCACAGAGCTTCTTGTGCCACTGCTAGTAGCAAAAACATCTGGTGTGGCAGAAGAGCCAATCATTGGATATAATGTTATTGAACATCTTCTACACCAGGAGAAAGAACAACCAACTCAAGCTATTGTTAAAACATTGACTGCAGCTTTCTTAGTAGATTGCAAGAGGGCAGAGGGGCTTATGCGATTGGTCCAGCAGGGTGACTCAAACTCTAGCGAGGGAACCGTGAAAGGGAGCAGACAAAGAACAAAAATTCTACCTGGTGAGACAAAAGTAGTTAAGTGTTCAGTGCGTACCATTCCTCTGACATGTAAACAGGAAATGCTGTTTATTCCAGTCGATAGTCCTGACTGGCCTGAGGGACTAGCAGTCACTGAGAATGTGGTCAAGCTCCAGAAGGGTACCCGATCAAAAGTCTTTATCCCAGTAAGTAATGACACATGTCATGATATTACACTTCAACCACGCACAGTGTTAGGCCATGTACAGAGTGTAAAAGCTGTCTACCCTGCTGCTGCAAAACCTGTGGATTTGGAAGAGGTAATTAGTCACACAGGAGGAGGTAAGGAAGTTGCAAAATCAAGGTCTGCATATTCATCGCCCATTGTATGTGTGCGGAAGAAAGATGGGAGTCTGCGATTGTGTTGTGACTATCGTGAACTGAACCAGAAATCTATCCCAGACCGCCATCCAATTCCCCGCATTCAAGACATGCTGGACAGTCTCAGTGGAAGTGCTTGGTTTTCCATCTTAGACCAAGGAAAAGCTTACCACCAAGGATTTTTGGAGGAAAATAGCCGACCATTGACAGCTTTTATTACACCTTGGGGGCTCTATGAATGGGTCCGCATTCCATTTGGCCTGTCTTCAGCACCAGCAGAGTTCCAACGCTGCATGGAGGAATGTCTAAGAGGGCAGAGAGATGAAATATGCCAGCCATATTTGGATGACAATCTAGTCCACAGCAAAACCTTTGAAGACCACCTCAGAGACTTGCGGAAAATCTTGCAGCGCTATCAACAACATGGAATTAAACTGACAGCAAGAAAATGCGAAGTCTTTAAGAATCGTGTAAGGTACCTGGGAAAGCTTGTTTCCAAAGATGGTCATACAGTGGTCCCTGCAGACCTAGCACCTGTTCAGGCCTTGCGAAAGCGGAAACCAGCAACGAACTCTGACTGCTGCAGAAAAGAACATCTGCATTCAGGAAAGCTTGAGTTCTTGGCCATAAAGTGGGCAATATGTGAATGGTTCAGAGATTATCTCTACTATACTCCTTCTTTTGTTGTCTACACTGACAACAATCCTTTAACATATGTGCTCACGACAGCTAAACCAAATGCCACTACACATCGCTGGGTTGCAGAGCTGGCTGATTTTAATTTCACGATTAAGTATCGTCCAGGGAAAACCAACACTGATGCGGATGGTTTGTCACGCATGCCACTGGGGATGGAGGAATATATGCAGAAGTGTTTGGTAGAAATGAGTCCAGATGTTATCAGCTGTGTGACAAAGGCTCTCAGTATTCAGTCAAAAGAACACACTCCATGGATGTGTCCGGTGACCATAGAGACAGCACTAGGTGAAGAAGAGGATAACCGGTTGAACTTTGACAGAGGATTGCTGAGGCATGCCCAGGAACAGGATCCAGTGATCAGCTCTGTGTTGAACTGCATAAGAACAAACCGATGGTATAGAGACAGAGATTGGAGTGGTCATGATGACCAGGCAGTACTGATGCGGGAAAGAAAAAGGTTGTTCCTGGATGAGAATGGAGTCCTTTACAGGAAAACAGCAACTTTATCACAGCTGGTGCTGCCCAAAAAGTTCTATGGCTTGGCCTTCAAAGAGTTGCACGAAAATATGGGTCATCTCGGTGTAGAGCGGACGCTCCACCTAATGAGAGACAGATTTTACTGGCCACATATGCAGAGGGACATTGAACATCATGTCTTGCGAATATGTCGCTGTCTCAAGACAAAACACCCCAACAAGCCAAACCGAGCACCACACACCAATATTGAAACAGCACACCCCTTTGAACTGGTTTCAGCTGACTTTCTTCATCTGGAGAGATGCAAAGGCGGGTATGAATATATCTTGGTCATCATGGACCATTTTACTCGCTTTGCTCAAGCGTATGCATGCCTCAACAAGTCAGCTAAGACAGCAGCTCAAAAGATCTTTGGGGATTTTGTGTTGAAATTTGGTTTCCCCACAAGATTGCACCATGACCAGGGGAAGGAGTTTGACAACGAGTTGTTTGCACAACTCCAGCAGCACAGTGGTATTAAAGGCTCCAGAACAACACCCTACCACCCGCAGGGGAACGGACAGGTGGAGCGATTTAATAGGACGCTCTTGTCCATGTTGCGCAATCTGACTGATAGGGAAAAGATGGATCGGAAGAACTCCCTGGCACAAGTAGTGCATGCATATAATTGCACACGCAATGAGGCAACAGGATTTGCTCCTTACTTCCTGCTGTTTGGACGTCATCCTAGGCTCCCTATTGATATCATGTTTAACCTTAGCCCCAGAGACCAATCCTCATCTCATCAAGAGCATGCAGAAAGTTGGAGAAAGCAAATGGATCAGGCATATAAGCTGGCTTCAGAATCAGCGCACATGGCAAGCGGGAGATCCAAGGACAGATCAGAGTGTCCAGTCTATGAGGTGCATCCTGAAACTGGACAAGGGCGAGTCAGAGTCCTTCACCGTAACATGCTCCTGCCTTGTGAATTCCTGCCAGTAGAACAAACCACAGCAACTCTGAGAAAGATGGTAAAAGGAATACAAAGCAAATCAAATTCTGAGCAGCAAGCCAGAGAAAGTACCTCTGAGGATGAGAGCGAATGGACAGGATTTTGCAGACCTTTCAAATCTGGCCAGCGGAAAGAGCAGCTGCAGCAGGAGGCTGAAGAATTCTATCCACAAGTGACACAGGAGTCTGTAAAAGAGGATGGTCAATTCATGGAGATGGTGGAGTGTGACATGGAAGAGGTGGTTCCACAGAATGTTGAGGAAGTGATGACAAGGTGTGGAAATGGGGAAGTGGAGTCTTCAGAGGCAGAGGGACTGGCGACACTTGGTAAAGGACCAGTACAATGGAGTAGTGAACCCGATGATGGAGCCACCCCTGAGGAGGATGGAAGCGGAATCCACAGGCCAGAACCTGCACTACCACAGAGACTATATCCTTTGAGAAAACGAAAACACAAACAGACATTTACTTACCATACACTAGGAGAACCCACATTAGAATAGTACACATAATAGACTCATATACACACACACACACAGGCATACACATATACAGAAAAGATAAACACATGCAGACAGAAAAATGCACAGACACTGAGTAGTTTAAAAGATTGACATTTATTTAATGTATAACACATTTTAAGTTACATATACATTGTTGTTATAGATAAGTTGTATTTTCCATTGACCCTGTTCAATCGGATATGATAACGACAGACCGGTAAAAAGGGAAATGGGGAACTGTAAACCGTGATGACAAGAGTCCAAAGCCGGTGATGTGTCTCTTAGGTCATGTTTGAGCTGATGGTACAAGAGACCTGCAGAAGGATACAGCGTCCGTATTAAAAATGGGGAATGTAGTTCCTTTCATGTTGCACAATGATGTCAGAATATTACAAATATATTATTCAGATATGTGAATCCAATTTATATAGCATAATTTAATGTATTTTTTCCCCCCTCAAATTATCCCAAGGCCAGATTGGCCATCTGTTCCCCCTGAAATAAA
>TU304503
TTGGAGAAAGCAAATGGATCAGGCATATAAGCTGGCTTCAGAATCAGCGCACATGGCAAGCGGGAGATCCAAGGACAGGTACGACAGAAAGACCCATGGAGTGGAGTTATAGCCTGGCTGTAGAGTTCTGGTTAGGAACATGTGTGAAAGAGGGGGCCCAGGAAAAATTTGATCATATTGGGAGGAACAGGTCTATGTGGTCCAGAAAAAGAGATCAGAGTGTCCAGTCTATGAGGTGCATCCTGAAACTGGACAAGGGCGAGTCAGAGTCCTTCACCGTAACATGCTCCTGCCTTGTGAATTCCTGCCAGTAGAACAAACCACAGCAACTCTGAGAAAGATGGTAAAAGGAATACAAAGCAAATCAAATTCTGAGCAGCAAGCCAGAGAAAGTACCTCTGAGGATGAGAGCGAATGGACAGGATTTTGCAGACCTTTCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_01982908_01987337.mRNA False 4448 mRNA 0.45 4 1982403 1987488
TU304503 True 440 lncRNA 0.47 1 1983294 1983733

Neighbor

gene id symbol gene type direction distance location
CI01000065_01955024_01969974 NA coding downstream 12180 1952778 ~ 1970223 (-)
CI01000065_01911879_01931555 HACE1, HACE1.L coding downstream 50848 1911512 ~ 1931555 (-)
CI01000065_01373412_01382125 NA coding downstream 599456 1373274 ~ 1382947 (-)
CI01000065_01297837_01321136 NA coding downstream 661267 1297799 ~ 1321136 (-)
CI01000065_01173590_01277821 ASCC3 coding downstream 704582 1173515 ~ 1277821 (-)
CI01000065_02288372_02357728 GRIK3 coding upstream 300884 2288372 ~ 2357728 (-)
CI01000065_02358877_02366169 NA coding upstream 371365 2358853 ~ 2366169 (-)
CI01000065_02679973_02700843 NA coding upstream 692351 2679839 ~ 2701444 (-)
CI01000065_02820772_02829132 NA coding upstream 832224 2819712 ~ 2829132 (-)
CI01000065_02940142_02940429 NA coding upstream 952566 2940054 ~ 2940813 (-)
G268327 NA non-coding downstream 20628 1877092 ~ 1961775 (-)
G268333 NA non-coding downstream 112919 1869224 ~ 1869484 (-)
G268252 NA non-coding downstream 162689 1819455 ~ 1819714 (-)
G268237 NA non-coding downstream 224413 1757614 ~ 1757990 (-)
G268151 NA non-coding downstream 301183 1603462 ~ 1681220 (-)
G268438 NA non-coding upstream 85997 2073485 ~ 2073707 (-)
G268460 NA non-coding upstream 91555 2079043 ~ 2080030 (-)
G268470 NA non-coding upstream 100867 2088355 ~ 2088746 (-)
G268471 NA non-coding upstream 102300 2089788 ~ 2090019 (-)
G268680 NA non-coding upstream 239953 2227441 ~ 2227694 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 1198742 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 1357746 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 1402376 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 1928016 50386 ~ 55774 (-)
G267024 NA other downstream 1936316 43039 ~ 46087 (-)
G269348 NA other upstream 1320955 3304357 ~ 3312480 (-)
G269679 NA other upstream 1786392 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 1805635 3793123 ~ 3806693 (-)

Expression


Co-expression Network