CI01000065_02288372_02357728 (GRIK3)


Basic Information

Item Value
gene id CI01000065_02288372_02357728
gene name GRIK3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2288372 ~ 2357728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_02288372_02357728.mRNA
GACCTCATGGCCATAAACCTGGAGCCGTACCGCTTCTGTGGCGTCAATATGACCGGCTTCCGCATCCTAAACGTGGACAATCCTCAGGTTGCCTCTATTGTGGAGAAATGGTCCCTTGAGAGGCAGATTCCCCCAAAACCAGACTCCGGTCTCCTGGAAGGGATCATGACGACAGATGCTGCTCTGACGTACGACGCTGTCCACATCGTGTCGGTCTCGTACCAGCATGCACCGCAGATGACTGTCAACTCATTGCAGTGTCATCGTCACAAACCCTGGAGGTTCGGAGGACGCTTCATGAGTTTCATTAAAGAGTCTCACTGGGACGGTCTGACGGGACGGCTGTGCTTCAACAGAACTACGGGTCTGCGCACCGACTTTGATCTTGACATTGTGAGTCTCAAGGAGGATGGCCTTCAAAAGGTGGGGAAGTGGAGTGCTTCTGGGGGGCTCAACATCACCGAGGTCCCCAGACAGAACGGCATGAACATCACAGACTCGCTTTCCAACCGCTCGCTGGTCATCACCACCATCCTGGAGGAGCCATATGTCATGCTTAAGAAGTCTGACAAGGCACTCGTCGGCAATGACCGCTTTGAGGGCTTCTGTGTTGACCTGCTTAAGGAGTTGGCCAGCATTCTGGGTTTTTCCTACGAGATCCACCTTGTGCAGGATGGAAAGTATGGGTTTCAAGATGATAAAGGCCAGTGGAATGGGATGATAAAGGAACTCATGGAACACAGGGCTGACCTTGCTGTGGCTCCTCTCACAATCACCTTTATGCGGGAGAAAGCTATTGACTTCTCCAAACCTTTCTTGAACACCGGCATCAGTATCCTGTACCGTAGACCCAACAGCACCAACTCTGGCTTCTTCTCTTTCCTGAACCCCATGACCCCTGATATCTGGGTCTACATCCTGTTGGCCTACCTGGGAGTGAGCTGTGTGCTCTTCGTCATCGCCAGGTTCAGCCCGTACGAGTGGTATGACGCCCATCCGTGTAACCCAGGCTCTGATGTGGTAGAAAACAACTTCACCCTTCTCAACAGCTTCTGGTTTGGCGTGGGCTCCCTCATGCAGCAAGGTTCAGAACTGATGCCTAAAGCTCTCTCCACTCGAATCATCGGAGGAATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCCTACACAGCCAACCTGGCGGCCTTCCTCACCGTCGAGAGGATGGATTCGCCTGTGGACTCAGCTGATGATCTGGCCAAACAGACCAAAATAGAGTATGGTGTAGTCAAAGATGGAGCTACAATGTCCTTCTTTAAGAAATCAAGAGTGTCTACATTTGAGAAGATGTGGGCTTTCATGAGCAGCAGACAGAGCACGTCGTTCGTCAAGTCCATTGAAGATGGGATTCAGAGAGTGTTAAAGTCAGACTACGCCCTGCTTATGGAGTCAACGACCATTGAGTATGTGACGCGCAGAAACTGCAATCTCACGCAGGTCGGCGGCATCATCGACAGTAAAGGTTACGGCATCGGAACCCCGAAAGGCTCGCCGTACAGGGATAAAATCACAATTGCTATCCTCGGCATCCTGGAAGATGGCCGTCTTCACATGCTCAAGGAGAAGTGGTGGAGCGGCAGCAGCTGTCTGGAGGATGAGCGGTATGAGACGGGTCCCATGGGCATCCAGAACCTGGGCGGCATCTTCATTGTGTTGGCATCTGGTCTGGTGCTGTCGGTGTTTGTGGCTATAGGAGAGTTCATCTACAAACTGCGAAAAACTGTAGAGCGTGAACAGGTCTTTCTGCAGTGCGGTGATGGAAGAGATCAGACTGTCGTTCACGTGCGAGAGACGGGTGAAACACAAGCCCCACCGCCCGCCGCCAGCCATGGTGAAGACGGACGCAGTGATCAACATACACTCCTTCAACGACCGTCGCCTGCCAGGAAAGGACAACATGAGCTGCAACACCGCAATGACGCCCGTGTTTCCATGACTTGCCTGGGCGACGGCCAGCTGAGGCACGTCCCCGGCGCCGTGCCGGAGAGCAGGGACTACGGCTCCGAGATGATTACGGCATTCACCATCAACCGCAGAGACATCCGACACCAAATGGCCAGTCAGAACGGTGGCAGTAGCAGCAAACCAGGTAGTGACCACATCCTCAAACCAATGTATCCCACCATGCCATTGCGAGAGGGAGGCCGATCGGTATCCTTCCTG

Function

symbol description
grik3 Enables adenylate cyclase inhibiting G protein-coupled glutamate receptor activity and kainate selective glutamate receptor activity. Involved in G protein-coupled glutamate receptor signaling pathway. Acts upstream of or within regulation of membrane potential. Is integral component of plasma membrane.

GO: NA

KEGG:

id description
K05203 GRIK3; glutamate receptor, ionotropic kainate 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_02288372_02357728.mRNA False 2205 mRNA 0.53 11 2288372 2357728

Neighbor

gene id symbol gene type direction distance location
CI01000065_01982908_01987337 NA coding downstream 300884 1982403 ~ 1987488 (-)
CI01000065_01955024_01969974 NA coding downstream 318149 1952778 ~ 1970223 (-)
CI01000065_01911879_01931555 HACE1, HACE1.L coding downstream 356817 1911512 ~ 1931555 (-)
CI01000065_01373412_01382125 NA coding downstream 905425 1373274 ~ 1382947 (-)
CI01000065_01297837_01321136 NA coding downstream 967236 1297799 ~ 1321136 (-)
CI01000065_02358877_02366169 NA coding upstream 1125 2358853 ~ 2366169 (-)
CI01000065_02679973_02700843 NA coding upstream 322111 2679839 ~ 2701444 (-)
CI01000065_02820772_02829132 NA coding upstream 461984 2819712 ~ 2829132 (-)
CI01000065_02940142_02940429 NA coding upstream 582326 2940054 ~ 2940813 (-)
CI01000065_02979795_02989709 BVES coding upstream 620115 2977843 ~ 2989763 (-)
G268701 NA non-coding downstream 27564 2260492 ~ 2260808 (-)
G268687 NA non-coding downstream 44947 2241130 ~ 2243425 (-)
G268679 NA non-coding downstream 48388 2239140 ~ 2239984 (-)
G268684 NA non-coding downstream 53101 2235053 ~ 2235271 (-)
G268680 NA non-coding downstream 60678 2227441 ~ 2227694 (-)
G268657 NA non-coding upstream 41599 2399327 ~ 2420933 (-)
G268751 NA non-coding upstream 180380 2538108 ~ 2538324 (-)
G268759 NA non-coding upstream 188378 2546106 ~ 2546464 (-)
G268790 NA non-coding upstream 234805 2592533 ~ 2592919 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 1504711 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 1663715 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 1708345 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 2233985 50386 ~ 55774 (-)
G267024 NA other downstream 2242285 43039 ~ 46087 (-)
G269348 NA other upstream 950715 3304357 ~ 3312480 (-)
G269679 NA other upstream 1416152 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 1435395 3793123 ~ 3806693 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010385 GRIK3 coding NC_007127.7 CM002900.2 3463727 ~ 3678976 (-)