CI01000065_02856492_02888060 (INPP5B)


Basic Information

Item Value
gene id CI01000065_02856492_02888060
gene name INPP5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2856492 ~ 2888455 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_02856492_02888060.mRNA
ATATCCTTAGCAGCCGTACACATGCTGTGGAGTGTGTTTCACTGCTGAATGATGTGAAAGAGAGCAAACTGATCGGACTGGTGCAGCAGGACAAGGAGCATGCGTTATTCCTATATTCCCATCGACGAATGGCCATCACTGGTGATGATGTCACACTGGATGAAATCATACCCATTTCTTATGACTTTTCAGTTGTTGAAGTTTCATCTCCAGATGAGCTTGCTGTTGTCGGTGCGGATACTCGAGTACGAGTTACTTTTTTAGAAGAGGAGTTGGAGCTGAAGTTACCTTTTGGATCTCATACCCGTCTGTTCCTCAGCGAAGTCAATCGGGCGTGGAGCGTGATGGCCAGTATCAGGGGCTCAGTAAACGCACTCATTAACAAGAAGAATATTAGAAATTTACAAGATGTCTGTGAGCAATATCCGAAGCAAGAGCCAAAGTTTGACTGGCTTACCAAGTACCGCAAGGTGTCAAAAGGAGCCAGATCACTGAGAAAGTCAATCGGAGCGACGAATATCAAGATGAGTCAAATAAAGAAATCAGAAAGAGCCAGCAGCAAGAAAGAGGACGAGCGGAGCAGAGACAGTGTGCATGAAAGTCAGGAGAGAGTGAAGGGTGAGGTGAGAGATGACCTGATCCGAAACTCCCAGCACATCCTGTCAAATAAAGACCAGATGATCGGCATGCCCCAGTTCGGCCTGCGGGATAACCTCATCAAATGTGAGCTCCTCAAGAACGAGGACGCCTACACCTACATCCAGAACTACAGCTTTTTCTTGGGCACCTACAATGTGAATGGCCAGAATCCAAAGGAAAGTCTCAGCCCATGGCTGGCGTCCACCCCCACCCCTCCAGACTTCTACCTTGTGGGTTTTCAGGAGCTGGACCTCAGCAAGGAGGCGTTTCTCTTCAATGATACTCCTAAAGAGCCGGAGTGGATGTTAGCCGTCTACAAGGGCCTCCATCCAGATGCCAAGTACGCTTTAGTGAAGCTGGTGCGGTTGGTGGGAATCATGCTGTTGTTCTATGTGAAGAAGGAGCATGCGGAGCACATCTCTGAGGTGGAGGCCGAGACCGTCGGCACAGGCGTCATGGGACGGATGGGTAATAAAGGTGCAGTAGCCGTCCGCTTCCAGTTTCACAATTCGGATATCTGTGTGGTGAACTCCCACCTCGCTGCACACACCGACGAGTTCGAAAGACGCAATCAGGACTTTAAGGACATTTGCCGCAGGATTCAATTCCGGCAGGATGACCCCACACTACCACCCCTCACCATCATGAAACACGATGTTGTGTTATGGCTGGGAGATCTAAACTACCGAATAAGTGAACTTGAAGTTGATCATGTGAAGGACTTAATAGCTAAAAAGGATTTTGAGACCCTGTGTAATTATGACCAGCTGAAGCGGCAGATGGATGAGGAGGTTGTGTTTGTGGGCTTCACAGAGGGAGAGATTGATTTCCAACCCACATACAAATACGACACTGGCTCAGATCAGTGGGATACGAGTGAGAAGTGTCGAGTTCCAGCGTGGTGTGACCGCATCCTGTGGAGGGGGAAGAGCATTAAACAGCTCAATTACCAGAGTCACATGACCCTGAAGACCAGTGACCACAAACCCGTCAGCTCTCTGCTAGAGATAGGGATCAAGGTTGTGAACGAGGAGTCCTACAAACGGACGTTCGAGGAGATCGTGAGGCGCATCGACAGACTGGAGAATGATTGTATTCCTTCAGTGTCGCTGTCGCAAAGAGAGTTCCACTTCGAGGATGTGAAGTTCATGCAGCATCAGGCACAGACTGTGACCGTTCACAACGATGGACAGGTGCCGTGTCAGTTTGAGTTCATTCAGAAGCTGGACGAGCCGGCTTACTGCAAGCCCTGGTTAACAGCAAACCCGTCTAAAGGCTTCCTGGCCCAGGGTGCCAGTGTGGACATCGACCTGGAGGTGTTTGTGAACCGCTCTACCGCTCCAGAGCTGAACTCAGGCCAGCAGCAGCTGGAGGACATCCTGATCCTGCACCTGGAGAGGGGTAAAGATTACTTCATCTCCATCACGGGCTCCTACCTGCCCAGCTGCTTCGGCTCTTCTCTCAGTACACTGTGCCTGCTGAGGGAACCCATCCAGGAGATGCCACTGGAGACCGTCAGAGAGCTGAGTATGAAGTCAAATAGCGATGCGAGTAACCCAGAGATGGATAAACCTCAAGAAATCCCCAAGGAATTATGGATGATGGTGGACCATCTCTTCCGTTATGCAAAAAAACAGGAAGACCTCTTTCAACAGCCCGGCCTGCGCAGTGAGTTCGAGGAGATTCGGGATTGTTTGGACACGGGCAGCTTGGACACTCTCCGTATCCTTCACACGGTCACTGTTGTGTATAATAAATTGCCCTTGACCGGAGCCCTGTCAGCTGGCAGTAACCACTCGGTGGCTGAAGCCCTGCTCCTGTTCCTCGATGCCCTCCCTGAACCCGTGGTTCCCTTCTCCTTCTACCCGGAGTGCTTAGACCGCTGCTCGGACAGCAGCCAGTGCAGACAGATAATTTCCACTCTACCTCAGTGCCATAAAAATGTTTTTAACTATTTAATGGCCTTCCTTCAAGAGTTGTTGAAGCACTCCGCATACAATCGGCTGGACGCCACTATTTTAGGCCCGGTCTTCGCTGGCCTTCTGCTTAGGTCATCCACAAAGCAAGATCCCACAGAGAAAAGAAAGGTGAAGGAGTTTTTCCAGCATTTCTTGGTCCAGACCCCATCTGACAGAGACATTCATGATAAATTACCTGAATAATGGACTGCGTCATCATGTTGCCTTTCCTTGTTTCACATGCCTAGTTTTTTCCAGGTATCAGCAGAATTATGTCCATAAACTTTGTAGTTGCCATTTAATTCAGAGCATTTTAAACCGTCATTGAAACTAATTGGTTTTATGACAAATCAGATGGGAGTTTTTATTTGAAAAATAATGGTTATTTAATGAAATATATTTGTATTTTGGATGTTTGTAAATACAGAACAGCTGTTCTTTTATATTAAATCTAAACAATCACAACAATCTCAGTGTTTGTGTTTTTCTTGCTCATATTAGGGGAGTGGATGCAAACTCATTTAGAGAATTTAATTAAAAAAATGTAGTATTATACCATGTAGATCTTTGTCTTTTAAGTCTTTTCACAAGCAACATCA

Function

symbol description
inpp5b Predicted to enable inositol-1,4,5-trisphosphate 5-phosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and pronephric duct morphogenesis. Predicted to be located in early endosome membrane and phagocytic vesicle membrane. Predicted to be active in cytosol and membrane. Orthologous to human INPP5B (inositol polyphosphate-5-phosphatase B).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01099 INPP5B_F; inositol polyphosphate 5-phosphatase INPP5B/F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_02856492_02888060.mRNA True 3196 mRNA 0.48 23 2856492 2888455

Neighbor

gene id symbol gene type direction distance location
CI01000065_02806198_02813320 NA coding upstream 42770 2806198 ~ 2813722 (+)
CI01000065_02783579_02788578 NA coding upstream 67626 2783315 ~ 2788866 (+)
CI01000065_02770419_02775297 NA coding upstream 80327 2770049 ~ 2776165 (+)
CI01000065_02714893_02755256 NA coding upstream 101122 2713441 ~ 2755370 (+)
CI01000065_02562189_02562709 NA coding upstream 293754 2562189 ~ 2562738 (+)
CI01000065_02896930_02919963 MTF1 coding downstream 8475 2896930 ~ 2920163 (+)
CI01000065_02924635_02929062 YRDC coding downstream 36180 2924635 ~ 2929092 (+)
CI01000065_02961093_02964309 NA coding downstream 72638 2961093 ~ 2964309 (+)
CI01000065_02976459_02977209 NA coding downstream 86896 2975351 ~ 2977220 (+)
CI01000065_03002626_03002997 NA coding downstream 114132 3002587 ~ 3003015 (+)
G268930 NA non-coding upstream 54635 2801644 ~ 2801857 (+)
G268859 NA non-coding upstream 152881 2703400 ~ 2703611 (+)
G268796 NA non-coding upstream 256500 2599769 ~ 2599992 (+)
G268789 NA non-coding upstream 263581 2592533 ~ 2592911 (+)
G268787 NA non-coding upstream 268180 2588023 ~ 2588312 (+)
G268965 NA non-coding downstream 50733 2939188 ~ 2940607 (+)
G268974 NA non-coding downstream 60747 2949202 ~ 2950412 (+)
G268996 NA non-coding downstream 109081 2997536 ~ 2999784 (+)
G268997 NA non-coding downstream 111888 3000343 ~ 3001750 (+)
G268957 NA non-coding downstream 121479 3009934 ~ 3037886 (+)
G268805 NA other upstream 218287 2608907 ~ 2638205 (+)
G268525 NA other upstream 616494 2239159 ~ 2239998 (+)
G267577 NA other upstream 1773837 1082153 ~ 1082655 (+)
G267432 NA other upstream 2073613 782283 ~ 782879 (+)
G266932 NA other upstream 2811826 43038 ~ 44666 (+)
G269181 NA other downstream 570502 3458957 ~ 3462928 (+)
G269225 NA other downstream 664349 3552804 ~ 3553214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location