CI01000065_02896930_02919963 (MTF1)


Basic Information

Item Value
gene id CI01000065_02896930_02919963
gene name MTF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2896930 ~ 2920163 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_02896930_02919963.mRNA
CCGCAACAAAAGCAAGCGTGTGGACACAAACCCAGGACTGAGCTCCTCCATCAGGATCATGGGAGAGAATGGCCCTCTCACAGAGTCAGCCATGCTCTTTGAAGACGAGGAAGAGGATGTGGACAAACTGTGCCGAGACGAGGAAGAAGAGGATAAGATGGCCAGGTTTGACAAAGATGACGACATAATCTCGGGACCCTCGTCGTCCTCGGGAAGGGTCTATGATCGCACCACTGTGCTCATCGAGCAAGACCCCATCCGCCTGGATGAGGAGGGAGAGGAGGACTGCATGGCCTTCCTGCCGGATGGAGAGGTTGAGGGGGACGAGGGATCGCTGGCTTTCATGGGTGACCCGGATGGCATGTCGCAGGGATACATACACCACACTATCTCGCCGGACCAGATACAGTTCATCATTAACCCGGGGTCCACACCTATGCCGCGAAACATTGAGGGCGCGACGCTGACGCTACACTCGGAGTGCCCGGAGACCAAGCAGAGAGAGGTGAAGCGATACCAGTGCATGTTCGAGGGCTGTACGCGCACCTACAGCACGGCGGGAAACCTGCGCACACATCAGAAGACACACCGCGGCGAATACACATTTGTGTGCAACCAGCAGGGCTGCGGCAAAGCCTTTCTCACGTCCTACAGCCTGAAGATTCACGTCCGCGTCCACACAAAAGAAAAACCCTTTGAGTGTGATGTCCAGGGCTGTGAGAAAGCCTTCAACACTCTCTACAGACTGAAAGCACACCAGAGGCTGCACACTGGGAAGACGTTTAACTGTGAATCAGAGGGATGCACCAAGTACTTCACCACGCTCAGTGACCTGAGGAAGCACATCCGCACGCACACGGGCGAAAAACCATTCAGGTGTGACCATGATGGCTGTGGTAAGGCTTTCGCTGCTAGTCATCACCTGAAAACACATGTACGGACACACACTGGAGAGAAGCCGTTTTTCTGTCCGAGCGATGGCTGTGAGAAGACCTTCAGCTCTCAATACAGCCTGAAGAGTCACATCCGAGGTCACGATAAAGATAACCCCGCGGAGTCTTTTGGGCTGGAGTCGTCTCCTCAGTCAGCCGCTGCAGATGTGTCCACTCACCCCACTTTCCCTCAGCCCCCTTCATCCACCTCATCCCCATCCTGCTCCATCACAACCCCTGCACTTGAGGCTCAGACTCCGCCCACAACACTCCCCTCTCAGCCGGCTCCGCCTCCTACTGCCAGCAGCACATTACTGACCTCCACTTTCCCCTGTGCTCCGGCCACCTCATCGCACTCACCAGAAGTGCCCGCTCCATCTGCACCCTCAGTCGCCCAGCACTACGTGACATTGCCCCCCACGGCTCCGCCGGGTCCCCTGCCAACTGCGCCCGGTGCCTCCAGCGTGGCGGGCATGACAACAGAGGTGACGGCGGCAGTAACGCACACAGTGCCTTTGGCTCCTCCTCCTCCTACAATCACCATCGCCCCCACGCTCGGCCTGCAGCCCAGCCTCGTCATGTCCGATCAGAACCTGCAGTGGATCCTCAGCAGTGCCGCCAGTGCGCAGCAAAACCCCGAACAACAGGGCCCAAAAGTAGAGAAGGTCTTTTTTACAACAGCCATACCAGTCGGTGGACATTCAGGGAATGCAGTGCAGCAGATCGGTCTGAGCCTGCCGGTGATCATCATCAAGCAGGAGGAGTCCTGCCAGTGTCAGTGTGCCTGCAGAGACTCAGCTAAAGACAAGAGCGCTGCCTCCTCACTGGAGAAGTCAAAGACCACGTCGCCTCCTCCTGCTCCTCCAGCCCTCCCTGAAGAACCTCGCTCCTGCTGCCCATCAGAACAGAACCCCGCTCCACCCCAGCAGGACAGCCTGTCCGCTCCGGTGACCCCCAACCCTCCCACCGACGGCCTGGCCAGCATGGATGTCTCAGATCTGCTCAGCCCAGAGACCACGGCCAACATAGAGGCTCTGCTGGCAGATGAGTTCTCCATGGCTGATGGAGGGAGCAGCAGCAGCGCCCCCTAGAGGACGCAGAGGTTCATCTGTACCGTGTACAGATGTGTAGCTCACATACACCCGTACCTCTGCTAAAGGCACACGGCTTTTCCCCGGCGTGTCTTCCAGAGGTTTATTGTGATTGGAACGAGTGGTTTTTGGTGCACTTTTAAGGGAGGGTATCAGGCAGAGTAGGTTAGCTGCTTTAGCGTTTTAACCCCGCAGAATTA

Function

symbol description
mtf1 Predicted to enable metal ion binding activity. Acts upstream of or within cellular response to cadmium ion and cellular response to zinc ion. Located in cytoplasm and nucleus. Is expressed in several structures, including digestive system; female organism; heart; male organism; and spleen. Orthologous to human MTF1 (metal regulatory transcription factor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_02896930_02919963.mRNA True 2223 mRNA 0.57 8 2896930 2920163

Neighbor

gene id symbol gene type direction distance location
CI01000065_02856492_02888060 INPP5B coding upstream 8475 2856492 ~ 2888455 (+)
CI01000065_02806198_02813320 NA coding upstream 83208 2806198 ~ 2813722 (+)
CI01000065_02783579_02788578 NA coding upstream 108064 2783315 ~ 2788866 (+)
CI01000065_02770419_02775297 NA coding upstream 120765 2770049 ~ 2776165 (+)
CI01000065_02714893_02755256 NA coding upstream 141560 2713441 ~ 2755370 (+)
CI01000065_02924635_02929062 YRDC coding downstream 4472 2924635 ~ 2929092 (+)
CI01000065_02961093_02964309 NA coding downstream 40930 2961093 ~ 2964309 (+)
CI01000065_02976459_02977209 NA coding downstream 55188 2975351 ~ 2977220 (+)
CI01000065_03002626_03002997 NA coding downstream 82424 3002587 ~ 3003015 (+)
CI01000065_03027516_03035037 MECR coding downstream 107353 3027516 ~ 3035094 (+)
G268930 NA non-coding upstream 95073 2801644 ~ 2801857 (+)
G268859 NA non-coding upstream 193319 2703400 ~ 2703611 (+)
G268796 NA non-coding upstream 296938 2599769 ~ 2599992 (+)
G268789 NA non-coding upstream 304019 2592533 ~ 2592911 (+)
G268787 NA non-coding upstream 308618 2588023 ~ 2588312 (+)
G268965 NA non-coding downstream 19025 2939188 ~ 2940607 (+)
G268974 NA non-coding downstream 29039 2949202 ~ 2950412 (+)
G268996 NA non-coding downstream 77373 2997536 ~ 2999784 (+)
G268997 NA non-coding downstream 80180 3000343 ~ 3001750 (+)
G268957 NA non-coding downstream 89771 3009934 ~ 3037886 (+)
G268805 NA other upstream 258725 2608907 ~ 2638205 (+)
G268525 NA other upstream 656932 2239159 ~ 2239998 (+)
G267577 NA other upstream 1814275 1082153 ~ 1082655 (+)
G267432 NA other upstream 2114051 782283 ~ 782879 (+)
G266932 NA other upstream 2852264 43038 ~ 44666 (+)
G269181 NA other downstream 538794 3458957 ~ 3462928 (+)
G269225 NA other downstream 632641 3552804 ~ 3553214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location