CI01000065_02924635_02929062 (YRDC)


Basic Information

Item Value
gene id CI01000065_02924635_02929062
gene name YRDC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2924635 ~ 2929092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_02924635_02929062.mRNA
GTTTATTCGTACGACCAGCGTACTTTTAAATATTTCCTCGTACACACGAAGTAAGTCCTTGAAGAGTGTCAGCATGTGTAAAGAGCTGAAGACGAGAGTCCTGCGGATTTCACCTCAAAACTCAGACGATATGACTTCACAGCAGCAGGAGTGGACGGAGGTCCTGAGCGCCACAGTAACGGCTCTGAAGGCCAGGCAGGTCGTGGCTGTTCCCACTGACACCATCTACGGTCTGGCCTGTGTGGCTCAGAACTCCACGGCCATCCGCAGAGTTTATGACATCAAGGGCAGGAATGGAGACAAACCTCTAGCCATCTGTGTCGGAGAAATACAGGACATATACAGGTACTGTAAGGTGTCTGTGAAGGAGGAGCTGCTCTCAGATCTGCTGCCTGGACCCGTTACACTAGTTCTGGAAAGATCCACCACACTGAACGCTGATCTCAATCCTTTCACCAAGCTCATAGGGGTCCGTATCCCAGACCACCCGTTCATGAGACGCCTCTGTCAGATGTGCGGCGAGCCGCTCGCTCTCACCAGTGCTAACGTCAGCGCTCAAACCAGCACGGTTGCTGTTAATGAGTTTGAGGATTTGTGGCCCAGTCTGGCGGTTGTGGTGGACGGTGGCCCGATTGGAGATAAAAGCCGCTTGGGTTCGACAGTTGTGGATCTGTCCGTGTGTGGCAGATACCGGATAATCAGACCTGGATGGTGAGTGACTCTCAGGACCATATTAACATGTTCA

Function

symbol description
yrdc Predicted to enable nucleotidyltransferase activity and tRNA binding activity. Predicted to be involved in regulation of translational fidelity. Predicted to be active in cytoplasm. Orthologous to human YRDC (yrdC N6-threonylcarbamoyltransferase domain containing).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_02924635_02929062.mRNA True 745 mRNA 0.52 5 2924635 2929092

Neighbor

gene id symbol gene type direction distance location
CI01000065_02896930_02919963 MTF1 coding upstream 4472 2896930 ~ 2920163 (+)
CI01000065_02856492_02888060 INPP5B coding upstream 36180 2856492 ~ 2888455 (+)
CI01000065_02806198_02813320 NA coding upstream 110913 2806198 ~ 2813722 (+)
CI01000065_02783579_02788578 NA coding upstream 135769 2783315 ~ 2788866 (+)
CI01000065_02770419_02775297 NA coding upstream 148470 2770049 ~ 2776165 (+)
CI01000065_02961093_02964309 NA coding downstream 32001 2961093 ~ 2964309 (+)
CI01000065_02976459_02977209 NA coding downstream 46259 2975351 ~ 2977220 (+)
CI01000065_03002626_03002997 NA coding downstream 73495 3002587 ~ 3003015 (+)
CI01000065_03027516_03035037 MECR coding downstream 98424 3027516 ~ 3035094 (+)
CI01000065_03237462_03238124 TMEM158 coding downstream 308282 3237374 ~ 3238153 (+)
G268930 NA non-coding upstream 122778 2801644 ~ 2801857 (+)
G268859 NA non-coding upstream 221024 2703400 ~ 2703611 (+)
G268796 NA non-coding upstream 324643 2599769 ~ 2599992 (+)
G268789 NA non-coding upstream 331724 2592533 ~ 2592911 (+)
G268787 NA non-coding upstream 336323 2588023 ~ 2588312 (+)
G268965 NA non-coding downstream 10096 2939188 ~ 2940607 (+)
G268974 NA non-coding downstream 20110 2949202 ~ 2950412 (+)
G268996 NA non-coding downstream 68444 2997536 ~ 2999784 (+)
G268997 NA non-coding downstream 71251 3000343 ~ 3001750 (+)
G268957 NA non-coding downstream 80842 3009934 ~ 3037886 (+)
G268805 NA other upstream 286430 2608907 ~ 2638205 (+)
G268525 NA other upstream 684637 2239159 ~ 2239998 (+)
G267577 NA other upstream 1841980 1082153 ~ 1082655 (+)
G267432 NA other upstream 2141756 782283 ~ 782879 (+)
G266932 NA other upstream 2879969 43038 ~ 44666 (+)
G269181 NA other downstream 529865 3458957 ~ 3462928 (+)
G269225 NA other downstream 623712 3552804 ~ 3553214 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009641 yrdc coding NC_007127.7 CM002900.2 4178949 ~ 4190726 (+)