XLOC_010388


Basic Information

Item Value
gene id XLOC_010388
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 4179036 ~ 4179967 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022078
CCCATATTAAATGCGCTTAAATGAGATTAATTGTTTGAATTTTTAGTATTAAAACTTAACTTGTTATccgagactttattttttatcgCAAGGCTGAAAGCGTTGTCTATGCTGTCTACCCGTCGTCTTCTCTCGACGCGCTCTCGCTATCAAAGCATGTTGACagcacttcaaaataaaagctccTTCAAAACTGCAgcttaaacaaataaactaaaattcaCGGAGATATTTTAGTCTCGCAGGATCAACAAAATTAAGAGTGAATCATCCAGGTGTATCATGTTAACACCTATTAATCACGCAATTAGGACTAATGATAACCGATATATTTTAGACCGTTCTTCTTTACAAGTAAAACTAAAATGGCGTCAGCTGGAGAGTCCTTCTGTGAGTCATCTGGAGGATCTTGATGGGCGGATCTCCGAAAGAGAAGAGCAGATGGAGCTCTGCACTATGATCCTGAACGACCTGCTGGAAATTCAGAAAATAGTTGCTAAAAGAGGACTtgaaaatacaacatttaaacCAGATAACTGAGCTGCTTGTTAAATTATGATCTGAAACTTCTGCGTATGAATAAAGTCTTGAAATGAATTCTTGATATTAA
>TCONS_00022077
CCCATATTAAATGCGCTTAAATGAGATTAATTGTTTGAATTTTTAGTATTAAAACTTAACTTGTTATccgagactttattttttatcgCAAGGCTGAAAGCGTTGTCTATGCTGTCTACCCGTCGTCTTCTCTCGACGCGCTCTCGCTATCAAAGCATGTTGACagcacttcaaaataaaagctccTTCAAAACTGCAgcttaaacaaataaactaaaattcaCGGAGATATTTTAGTCTCGCAGGATCAACAAAATTAAGAGTGAATCATCCAGGTGTATCATGTTAACACCTATTAATCACGCAATTAGGACTAATGATAACCGATATATTTTAGACCGTTCTTCTTTACAAGTAAAACTAAAATGGCGTCAGCTGGAGAAAACACTGGTGGTACAACGGAGTCTTCAACTCAAAGTCCTTCTGTGAGTCATCTGGAGGATCTTGATGGGCGGATCTCCGAAAGAGAAGAGCAGATGGAGCTCTGCACTATGATCCTGAACGACCTGCTGGAAATTCAGAAAATAGTTGCTAAAAGAGGACTtgaaaatacaacatttaaacCAGATAACTGAGCTGCTTGTTAAATTATGATCTGAAACTTCTGCGTATGAATAAAGTCTTGAAATGAATTCTTGATATTAA
>TCONS_00022079
CTGTGACGCCGGCGAGATCAAACAGAAAACACTGGTGGTACAACGGAGTCTTCAACTCAAAGTCCTTCTGTGAGTCATCTGGAGGATCTTGATGGGCGGATCTCCGAAAGAGAAGAGCAGATGGAGCTCTGCACTATGATCCTGAACGACCTGCTGGAAATTCAGAAAATAGTTGCTAAAAGAGGACTtgaaaatacaacatttaaacCAGATAACTGAGCTGCTTGTTAAATTATGATCTGAAACTTCTGCGTATGAATAAAGTCTTGAAATGAATTCTTGATATTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0140098 catalytic activity, acting on RNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022078 False 610 lncRNA 0.37 3 4179036 4179914
TCONS_00022077 False 645 lncRNA 0.37 4 4179036 4179914
TCONS_00022079 True 289 lncRNA 0.41 4 4179036 4179967

Neighbor

gene id symbol gene type direction distance location
XLOC_010387 si:ch211-175f12.2 coding downstream 147650 4010967 ~ 4031386 (-)
XLOC_010386 NA coding downstream 382403 3784874 ~ 3796633 (-)
XLOC_010385 GRIK3 coding downstream 500060 3463727 ~ 3678976 (-)
XLOC_010384 NA coding downstream 830327 3348006 ~ 3348709 (-)
XLOC_010383 csf3r coding downstream 1051287 3103182 ~ 3127749 (-)
XLOC_010389 rrp15 coding upstream 16965 4196932 ~ 4203022 (-)
XLOC_010390 CU469524.1 coding upstream 30510 4210477 ~ 4211935 (-)
XLOC_010391 CU469524.2 coding upstream 54760 4234727 ~ 4267736 (-)
XLOC_010392 vegfaa coding upstream 107575 4287542 ~ 4317879 (-)
XLOC_010393 ppp1r8b coding upstream 333630 4513597 ~ 4531657 (-)
XLOC_010626 CR392024.2 misc upstream 16715145 20895112 ~ 20895175 (-)
XLOC_010380 NA non-coding downstream 1367028 2809717 ~ 2812008 (-)
XLOC_010378 CU929110.1 non-coding downstream 1443237 2735676 ~ 2735799 (-)
XLOC_010372 NA non-coding downstream 2229967 1948025 ~ 1949069 (-)
XLOC_010394 BX927222.1 non-coding upstream 347514 4527481 ~ 4527647 (-)
XLOC_010396 NA non-coding upstream 374104 4554071 ~ 4558497 (-)
XLOC_010399 NA non-coding upstream 505696 4685663 ~ 4695623 (-)

Expression


Co-expression Network