CI01000065_03015397_03024204


Basic Information

Item Value
gene id CI01000065_03015397_03024204
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3014852 ~ 3024204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_03015397_03024204.mRNA
ATGTCTTACGGAATGATGGACAGCTGTCACTCACAGCCGAGAGATTTCAGCAATCTCACTCAGACATGCAGCTCAAACATCCAGAAAATCACACAAAACACTGGCCAAATCAAGAGCATGCTGTTCCAACTCAGTACCAGACCGGACACACCAGAACTTCAGGACAGACTCCAGCAAATGCAGCACTACACAAACCAGTTAGCAAAAGAGACCAACAGACATCTGAAAGAGCTGGGCTCTTTGCCACAGCCGCAGTCCCCTTCGGAACAGGTTGATGAGCTCAATCAAGATGAACAGCTTGTGACATTTGAAAAAAATGAAGGGTGGCGAATGCAGACAGAAGAGGAGCCTGTGACCGAAGAAGACCTGGAGCTTATTAAAGAGAGAGAGACCAATATCCGTCAGCTGGAGTCAGACATCATGGATGTGAATCAGATCTTCAAGGATCTCGCAGTCATGATCCATGACCAAGGTGACATGATAGATAGCATTGAAGCCAACGTGGAGAGTGCAGAGGTGCATGTGGAGCGAGGGGCCGAGCAGATCCAGCAGGCGGCCTATTATCAGAGAAAATCCCGCAAGAGGATGTGTATCCTGGCTCTTGTCATGTCGCTAGTGGCAACCATCTTTGCTATAATCATTTGGCAAGCAGTCAGATAAGATGAGAGCTGAACCTGACTGAAGTGCTGGATCCTGCTCCAGTGCTGAGTGTGTGTGTGTGTGTGTGTTTGGGTCAGAGGTGGCCTTTACCATTGTGTTTATTATATTAACTCCTTATGTTACTCTTAATAGTCTATTTAAAATGCATTCTATCCACACATTACAATCACGACCGGGAACAAAATCAACATTCAATCTTCATCACTCCCTCAGCCCCTCAGCGTTAATGACCAAGGCCATGAGAGCAAAAAAATAAAAATTAAATAATAGGGATTAGATAAGTGATTTAATACAATATGAATAAGAATAGGCTACATCAAGAGGAAATGTTTTACACTTAGGTTGATCTGATTTTGACATTTAGAGCATGTCTTTCTGATAATGAAGTGCTGCAAAAGCTCTGAAAGTTTATCTTTATACAGCGATCTCATAACGTCGTGTTCAGTTGACATCTGAGCAAGTGTGGACAGTCTTTCTTGCAGCATGTTGGACCGCAGGAATGATTTTATCAGCCGCAGACGCCAGATATAAATATAGAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_03015397_03024204.mRNA True 1205 mRNA 0.43 8 3014852 3024204

Neighbor

gene id symbol gene type direction distance location
CI01000065_02992054_02993108 POPDC3 coding downstream 21685 2991815 ~ 2993167 (-)
CI01000065_02979795_02989709 BVES coding downstream 25089 2977843 ~ 2989763 (-)
CI01000065_02940142_02940429 NA coding downstream 74039 2940054 ~ 2940813 (-)
CI01000065_02820772_02829132 NA coding downstream 185720 2819712 ~ 2829132 (-)
CI01000065_02679973_02700843 NA coding downstream 313408 2679839 ~ 2701444 (-)
CI01000065_03037531_03045960 SMPDL3B coding upstream 13157 3037361 ~ 3045960 (-)
CI01000065_03060532_03105332 LIMD1 coding upstream 35213 3059417 ~ 3106175 (-)
CI01000065_03113629_03136974 LARS2 coding upstream 89254 3113458 ~ 3136974 (-)
CI01000065_03159239_03164326 LARS2 coding upstream 135035 3159239 ~ 3164326 (-)
CI01000065_03369379_03371121 NA coding upstream 344715 3368919 ~ 3371441 (-)
G269304 NA non-coding downstream 64520 2949545 ~ 2950332 (-)
G269303 NA non-coding downstream 75685 2938708 ~ 2939167 (-)
G269302 NA non-coding downstream 76568 2937920 ~ 2938284 (-)
G269253 NA non-coding downstream 81306 2932150 ~ 2933546 (-)
G269337 NA non-coding upstream 84084 3108288 ~ 3109555 (-)
G269348 NA non-coding upstream 280153 3304357 ~ 3312480 (-)
G269424 NA non-coding upstream 327396 3351600 ~ 3352903 (-)
G269436 NA non-coding upstream 372906 3397110 ~ 3397359 (-)
G269440 NA non-coding upstream 412934 3437138 ~ 3437390 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 2231191 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 2390195 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 2434825 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 2960465 50386 ~ 55774 (-)
G267024 NA other downstream 2968765 43039 ~ 46087 (-)
G269679 NA other upstream 749676 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 768919 3793123 ~ 3806693 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009683 stx12l coding NC_007127.7 CM002900.2 7626535 ~ 7641367 (+)