CI01000065_03113629_03136974 (LARS2)


Basic Information

Item Value
gene id CI01000065_03113629_03136974
gene name LARS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3113458 ~ 3136974 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_03113629_03136974.mRNA
GGAGCCCTTCAGAAAGCTGCTGGTTCAGGGTCTGATAAAGGGGCAGACGTTCAGGGTGGCAGAGACCGGCCAGTACCTGAAGAAAGAGGACGTTGATTTCACAGGTTCGGAGCCCGTTCAGAGGGACACCGGGAGCCGACTGCAGGTCACATGGGAGAAGATGAGTAAATCCAAACACAACGGGCTGGACCCTCAGGAGGTGGTGCAGCAGTACGGCATCGACACCATGCGCCTCTACCTTCTGTACGCCGCTCCACCTGAGCAGGACATCTTATGGGACGTCAAGACTGATGCCATCCCAGGAGTGTTGAGATGGCAGGCCCGTCTGTGGGGTTTGGTCACCAAACTGAGAACGACCCGTGAGGGTCAAGAGACGCCCAACCCATCCGTCCTGAACAAGAGAGAGCGCTCCGAGGCCAAGAAGATCTGGGAGAACAAGAACTACGCCATCACACAGGGCCTCTCGAGGATAGTTGTTGTTCTGATGTGGAGCCGGCCTGATCTGGACCGTCCAAAGGAAATTGGCGATCTAGTCTCAAACCACGACAGAAGAGCAGCTTCCACTAGCAGAGGTCACTTCACAGAGGACTTCCTGTTTAATGCGGCCATCTCTCGGCTCATGGGGCTGACCAACACACTCTCACAAGCCTCAGCTCGAGTAGTTCTGCACAGCGTGGAGTTCGAGGAGGCTCTGGCGTCGCTCTGTCTGATGGCTGCACCCATGTGTCCACACTTAGCTTCTGAACTATGGGCAGGTTTGTCTCAGGTGAGGAATCCTCTAGGAAGTGTGCTGTCTGGGAAGGGAAGTGTCCTTCAGCAGCCGTGGCCTAGTGTGGACCCAGAGTACCTACAAACCCCCGACACACTCCAGCTGTCCGTACGGATCAATAATAAGGCGTGTGGGAATATATCTGTACCTCGTGAAGTGGCTCAGGACGCACAGAAGGTTCAGGAACTGGTACTGAACAGTCCTCTGGGCGCCCGTCTGCTCTCTAACCGCGTCATAAAGAAAGTCTTCCTCTCACCCAGAACTGCCCTCATCAACTTCCTGGTGGAAGAATGACATGGCGAGATGTGCCTTACTGGAGTTTTGGATCCAGAATGGACCATACATGAAAAGACTCTGATATCCAAAGAGCCACGTCAGGAGAACAGGACATGATGTACTGAGTAACAAGATGTTGTGGAGTGTTTCTCAGATGAAAATGAAAATTGCTCTTTGCTACTAAATAAA

Function

symbol description
lars2 Predicted to enable leucine-tRNA ligase activity. Predicted to be involved in leucyl-tRNA aminoacylation and mitochondrial translation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human LARS2 (leucyl-tRNA synthetase 2, mitochondrial).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_03113629_03136974.mRNA True 1234 mRNA 0.53 8 3113458 3136974

Neighbor

gene id symbol gene type direction distance location
CI01000065_03060532_03105332 LIMD1 coding downstream 7283 3059417 ~ 3106175 (-)
CI01000065_03037531_03045960 SMPDL3B coding downstream 67498 3037361 ~ 3045960 (-)
CI01000065_03015397_03024204 NA coding downstream 89254 3014852 ~ 3024204 (-)
CI01000065_02992054_02993108 POPDC3 coding downstream 120291 2991815 ~ 2993167 (-)
CI01000065_02979795_02989709 BVES coding downstream 123695 2977843 ~ 2989763 (-)
CI01000065_03159239_03164326 LARS2 coding upstream 22265 3159239 ~ 3164326 (-)
CI01000065_03369379_03371121 NA coding upstream 231945 3368919 ~ 3371441 (-)
CI01000065_03373810_03377138 NA coding upstream 235729 3372703 ~ 3377138 (-)
CI01000065_03385522_03396519 FEZ2 coding upstream 248548 3385522 ~ 3397081 (-)
CI01000065_03413002_03434286 WDR26, WDR26.S coding upstream 275755 3412729 ~ 3434286 (-)
G269337 NA non-coding downstream 3903 3108288 ~ 3109555 (-)
G269304 NA non-coding downstream 163126 2949545 ~ 2950332 (-)
G269303 NA non-coding downstream 174291 2938708 ~ 2939167 (-)
G269302 NA non-coding downstream 175174 2937920 ~ 2938284 (-)
G269348 NA non-coding upstream 167383 3304357 ~ 3312480 (-)
G269424 NA non-coding upstream 214626 3351600 ~ 3352903 (-)
G269436 NA non-coding upstream 260136 3397110 ~ 3397359 (-)
G269440 NA non-coding upstream 300164 3437138 ~ 3437390 (-)
G269399 NA non-coding upstream 353598 3490572 ~ 3491380 (-)
CI01000065_00782736_00793467 NT5C3A, NT5C3 other downstream 2329797 782697 ~ 793467 (-)
CI01000065_00622545_00624625 NA other downstream 2488801 622123 ~ 624657 (-)
CI01000065_00563411_00579174 MBPB, MBP other downstream 2533431 562848 ~ 580083 (-)
CI01000065_00050903_00055774 NA other downstream 3059071 50386 ~ 55774 (-)
G267024 NA other downstream 3067371 43039 ~ 46087 (-)
G269679 NA other upstream 636906 3773880 ~ 3774294 (-)
CI01000065_03794501_03806693 VEGFAA, VEGFA other upstream 656149 3793123 ~ 3806693 (-)

Expression


Co-expression Network