CI01000065_03398558_03399971 (CNIH4)


Basic Information

Item Value
gene id CI01000065_03398558_03399971
gene name CNIH4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3398558 ~ 3400425 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000065_03398558_03399971.mRNA
ATTATTACTCTGTCTGATCTGGAATGTGACTACATCAATGCTCGAGCTTGCTGCTCCAAGTTAAACAAATGGGTCATCCCTGAGATGATCGGTCAGGCTCTGGCCACCGTGTTAATGCTGGTGTCCATGCACTGGTTCGTCTTCCTGCTCAACTTACCTGTGGCATCATGGAACGTTTACAGATATGTGAAGGTCCCCATGGGGAACATGGGAGTGTACGATCCCACAGAGATTCACAACAGAGGCCAGCTCAAGTCCCATATGAAGGAAGCCATGATCAAACTGGGCTTCCACCTTCTCTGCTTCTTCATCTACCTGTACAGGTAAAAAACAACCTTTCAATTCTGCTCCACATTGCAGCAGCTTACACTGTGACCTAACCAGACGAGACAAAATATCTTTTCCATGTTAATGGAGTTTTTGCCCTAACAACATACAAAATATGACAGTGATAATCTCAGGTACCAATTATGTGCTTTATTGAATGTTAAAAGTGTCTAATGTGAGTTTGATTATCATTTTGTGTGACCTTTATACCGTACTGAAAGCGACTGTGGATAATTCACCTCAGATATTGAAAATAAAGGAAACAGTAACTCAGTGTGAACAAACAAGTGTATTCTATGACAAAGACTGTTTCAGTCACTCAGTATGTATTTTTAATAATGGTAATATTTATGAATTTCATCCATTTCTCTGTGAGTGCACTGAGACTCCGCCCACACGCTCTCCTGATTGGCTGTGATTTTTATTAAGTTGTTTTATTATTCAAATGTTATTA

Function

symbol description
cnih4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Orthologous to human CNIH4 (cornichon family AMPA receptor auxiliary protein 4).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000065_03398558_03399971.mRNA True 781 mRNA 0.40 3 3398558 3400425

Neighbor

gene id symbol gene type direction distance location
CI01000065_03344678_03368295 NA coding upstream 30086 3344331 ~ 3368472 (+)
CI01000065_03304326_03307505 NA coding upstream 91001 3303725 ~ 3307557 (+)
CI01000065_03244494_03285831 NA coding upstream 112727 3244494 ~ 3285831 (+)
CI01000065_03237462_03238124 TMEM158 coding upstream 160405 3237374 ~ 3238153 (+)
CI01000065_03027516_03035037 MECR coding upstream 363464 3027516 ~ 3035094 (+)
CI01000065_03486630_03494354 NA coding downstream 86142 3486567 ~ 3495740 (+)
CI01000065_03692428_03692874 NA coding downstream 292003 3692428 ~ 3693420 (+)
CI01000065_03709249_03716992 NA coding downstream 308719 3709144 ~ 3717908 (+)
CI01000065_03815841_03816140 NA coding downstream 412433 3812858 ~ 3816590 (+)
CI01000065_03980525_03983765 NA coding downstream 580100 3980525 ~ 3984923 (+)
G269033 NA non-coding upstream 285644 3111847 ~ 3112914 (+)
G269029 NA non-coding upstream 289620 3108590 ~ 3108938 (+)
G269005 NA non-coding upstream 316877 3025208 ~ 3081681 (+)
G268964 NA non-coding upstream 375332 3017892 ~ 3023226 (+)
G268960 NA non-coding upstream 383056 3012493 ~ 3015502 (+)
G269167 NA non-coding downstream 37547 3437972 ~ 3438539 (+)
G269181 NA non-coding downstream 58532 3458957 ~ 3462928 (+)
G269205 NA non-coding downstream 115869 3516294 ~ 3516541 (+)
G269218 NA non-coding downstream 141678 3542103 ~ 3542572 (+)
G269223 NA non-coding downstream 151345 3551770 ~ 3551991 (+)
G268805 NA other upstream 760353 2608907 ~ 2638205 (+)
G268525 NA other upstream 1158560 2239159 ~ 2239998 (+)
G267577 NA other upstream 2315903 1082153 ~ 1082655 (+)
G267432 NA other upstream 2615679 782283 ~ 782879 (+)
G266932 NA other upstream 3353892 43038 ~ 44666 (+)
G269225 NA other downstream 152379 3552804 ~ 3553214 (+)

Expression


Co-expression Network